View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14559_low_6 (Length: 281)
Name: NF14559_low_6
Description: NF14559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14559_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 37733891 - 37734047
Alignment:
| Q |
1 |
gattctaaggtccacgctgctaactttttggttgagagacacatgagaactctcctctgtcacgcttgtcaatctccgacaccgtggaaagcctccggtg |
100 |
Q |
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| T |
37733891 |
gattctaaggtccacgctgctaactttttggttgagagacacatgagaactctcctctgtcacgcttgtcaatctcccacgccgtggaaagcctccggtg |
37733990 |
T |
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| Q |
101 |
ctaggctcggtaacgcgctttcgttgtgtgatagatgcgcgggcggaagaaaactcc |
157 |
Q |
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| T |
37733991 |
ctaggctcggtaacgcgctttcgttgtgtgatagatgcgccggcggaagaaaactcc |
37734047 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 37734077 - 37734135
Alignment:
| Q |
205 |
ggtaccagcgctgaacaacaagaagaaagcgaaggtgacaatgacaatgaagaagatac |
263 |
Q |
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| T |
37734077 |
ggtaccagcgctgaacaacaagatgaaagcgaaggtgacaatgacaatgaagaagatac |
37734135 |
T |
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