View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14559_low_7 (Length: 271)
Name: NF14559_low_7
Description: NF14559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14559_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 14791189 - 14790939
Alignment:
| Q |
18 |
attacttgcattacaaacaaaaataccatctaactaattgcccttcaaaactcattattttaacatttaagctaactcttgcaaaaatgatcatgcaaat |
117 |
Q |
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| T |
14791189 |
attacttgcattacaaacaaaaataccatctaactaattgcccttcaaaactcattattttaacatttaagctaactcttgcaaaaatgatcatgcaaat |
14791090 |
T |
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| Q |
118 |
tgaaaacatcaggcacataagcaagtgattataaaggtaacgttcagaaccacctacaaataagcattttctgagtatacatttgaagtctaaattccac |
217 |
Q |
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| T |
14791089 |
tgaaaacatcaggcacataagcaagtgattataaaggtaacgttcagaaccacctacaaataagcatttcctgagtatacatttgaagtctaaattccac |
14790990 |
T |
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| Q |
218 |
attttcataggcaagctcaatctccaacactactatcatgcagtctgtgctgct |
271 |
Q |
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| T |
14790989 |
attttcataggcaagctcaatcttcaa---tactatcatgcagtttgtgctgct |
14790939 |
T |
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