View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_high_1 (Length: 544)
Name: NF1455_high_1
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 341 - 528
Target Start/End: Complemental strand, 33115867 - 33115680
Alignment:
| Q |
341 |
cacagaaaattatgataaatcagaagtactaatttagtccatatttagtattgcagtataatttaaaggagtattgcttatactttagatccaagagagt |
440 |
Q |
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| T |
33115867 |
cacagaaaactatgataaatcagaagtattaatttagtccatatttagtattgcagtataatttaaaggagtattgcttatactttagatccaagagagt |
33115768 |
T |
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| Q |
441 |
aaatcacaatgtaatggttgttccaagttcagtcacacacaatacaattacttttgttgaagttgattgaaattaaacatgagagaac |
528 |
Q |
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| T |
33115767 |
aaatcacaatgtaatggttgttccaagttcagtcacacacaatacaatcacttttgttgaagttgattgaaattaaacatgagagaac |
33115680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 33116313 - 33116098
Alignment:
| Q |
19 |
catgctaaatgaataagataaggaggatgatagaatcaaatttattttcacaagcatcctctagaaaatagggctgccctagatatttagactcacacat |
118 |
Q |
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| T |
33116313 |
catgctaaatgaataagataaggaggatgatagaatcaaatttattttcacaagcatcctctaaaaaatagggctgccctagatatttagactcacacat |
33116214 |
T |
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| Q |
119 |
tgcacacttgcagttgcacgtatgtaatgagtggaagtggtgaatgtcaaagattgctgttggttgcaacttcgaaagaagtgccatgcatgggataaag |
218 |
Q |
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| T |
33116213 |
tgcacact------tgcacgtatgtaatgagtggaagtggtgaatgtcaaagat---tgttggttgcaacttagaaagaagtgc----catgggataaag |
33116127 |
T |
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| Q |
219 |
tcaagtcaatatgatttgtagctgacagt |
247 |
Q |
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| T |
33116126 |
tcaagtcaatatgatttgtagcggacagt |
33116098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 33116033 - 33115984
Alignment:
| Q |
281 |
gataacttttggaataactattgataagaaaatcaaaacaatagagagaa |
330 |
Q |
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| T |
33116033 |
gataacttttggaataaatattaataagaaaatcaaaacaatggagagaa |
33115984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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