View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_high_11 (Length: 296)
Name: NF1455_high_11
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 32177561 - 32177284
Alignment:
| Q |
11 |
gcaactccacccaccttcttccttcattgatctcttcactttcaccacccattactgtttttatctctgacatacttcttttttcccctctcaataaaat |
110 |
Q |
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| T |
32177561 |
gcaactccacccaccttcttccttcattgatctcttcactttcaccacccatcactgtttttatctctgacatacttcttttttcccctctcaataaaat |
32177462 |
T |
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| Q |
111 |
cactcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttattctctcatttccctactcttactcaatccttatcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32177461 |
cactcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttattctctcatttccctactcttgctcaatccttatcc |
32177362 |
T |
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| Q |
211 |
ttacaagaacaagaatatgatgcttctgatggggttctagttccaggcattccattttcacctttaccatattcatct |
288 |
Q |
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| T |
32177361 |
tcacaagaacaagaatatgatgcttctgatggggttctagttccaggcattccattttcacctttaccatattcatct |
32177284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 32184725 - 32184536
Alignment:
| Q |
14 |
actccacccaccttcttccttcattgatctcttcactttcaccacccattactgtttttatctctgacatacttcttttttcccctctcaataaaatcac |
113 |
Q |
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| T |
32184725 |
actccaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatctctgatatcttccttctttcacctctcatttcaatcac |
32184626 |
T |
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| Q |
114 |
tcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttattctctcatttccctactcttactcaatc |
203 |
Q |
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| T |
32184625 |
tcaacaactttctctacctaactataccttgtttacttcttcagcttccatgttctccttcttttctcacttccctactcttgctcaatc |
32184536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 32184499 - 32184460
Alignment:
| Q |
249 |
agttccaggcattccattttcacctttaccatattcatct |
288 |
Q |
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||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32184499 |
agttccaggtattgcattttcacctttaccatattcatct |
32184460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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