View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_high_14 (Length: 249)
Name: NF1455_high_14
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_high_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 513770 - 513535
Alignment:
| Q |
13 |
cagacacatcatttattcacctttaaaaggagaatttttagtcattaaactacttgaacnnnnnnnttgttacattgataatattctaaaatcataacta |
112 |
Q |
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| T |
513770 |
cagacatatcatttattcacttttaaaagaagaatttttaatcattaaactacttga-caaaaaaattgttacattgataatattctaaaatcataacta |
513672 |
T |
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| Q |
113 |
ttttgagataaaaagtgcaaatatgacgattattataagagggaggaataataataatttaaaacccatttaaaactatttcttctactttctacttgat |
212 |
Q |
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| T |
513671 |
ttttgagataaaaagtgcaaatatgacgattattataagagggaggaataataataatttaaaatccatataaaactatttcttctactttctacttgat |
513572 |
T |
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| Q |
213 |
ttggcgtacttggattgtttggcgtgaccggaactct |
249 |
Q |
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| T |
513571 |
ttggcgtacttggattgtttggcgtgaccggaactct |
513535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 8622834 - 8622878
Alignment:
| Q |
25 |
ttattcacctttaaaaggagaatttttagtcattaaactacttga |
69 |
Q |
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||||||||||| | |||| ||| |||||||||||||||||||||| |
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| T |
8622834 |
ttattcaccttaagaaggtgaagttttagtcattaaactacttga |
8622878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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