View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1455_high_23 (Length: 227)
Name: NF1455_high_23
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_high_23 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 36849652 - 36849874
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatcaataggagcatgcatattggaatttgctccaatgtccatttccatgga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36849652 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatcaataggagcatgcatattggaatttgctccaatgtccatttccatgga |
36849751 |
T |
|
| Q |
105 |
aatgttgtctacaatgtcatgtcttccaagatctttctcctcttcaccatcatcatcaataataataagttctctgttagtatttacccccttctggttg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36849752 |
aatgttgtctacaatgtcatgtcttccaagatctttctcctcttcaccatcatcatcaataataataagttctctgttagtatttacccccttctggttg |
36849851 |
T |
|
| Q |
205 |
aatgcagttctgccttgtatgtc |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36849852 |
aatgcagttctgccttgtatgtc |
36849874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 3004442 - 3004390
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca |
57 |
Q |
| |
|
|||||||||| |||||||||||| |||| || |||||||||| ||||| |||| |
|
|
| T |
3004442 |
catctgtcccgtcctggttgaattcaatcccatcttgtttgtgctctatatca |
3004390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 6619963 - 6620063
Alignment:
| Q |
65 |
catgcatattggaatttgctccaatgtccatttccatggaa---atgttgtctacaatgtcatgtcttccaagatctttctcctcttcaccatcatcatc |
161 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||| |||||||| |||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6619963 |
catgcatattggaatttgctctattgtccatttccattgaattgttgttgtctgtaatgccatgtctttcaagatctttctcctcttcgtcatcatcatc |
6620062 |
T |
|
| Q |
162 |
a |
162 |
Q |
| |
|
| |
|
|
| T |
6620063 |
a |
6620063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 6618593 - 6618493
Alignment:
| Q |
65 |
catgcatattggaatttgctccaatgtccatttccatggaaatgttgt---ctacaatgtcatgtcttccaagatctttctcctcttcaccatcatcatc |
161 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| ||| |||||| | |||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6618593 |
catgcatattggaattttctctaatgtccatttccattgaattgttgttgcatgtaatgccatgtctttcaagatctttctcctcttcctcatcatcatc |
6618494 |
T |
|
| Q |
162 |
a |
162 |
Q |
| |
|
| |
|
|
| T |
6618493 |
a |
6618493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 6781284 - 6781342
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatcaatagga |
63 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||| | |||||||||| |
|
|
| T |
6781284 |
catctgtcccctcctggttgaattcaattccatcttgtttgtgctcgatatcaatagga |
6781342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 6666963 - 6666905
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatcaatagga |
63 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||| |
|
|
| T |
6666963 |
catctgtcccctcctggttgaatccaattttgtcttctttttgctctacatcaatagga |
6666905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 49879585 - 49879523
Alignment:
| Q |
165 |
aataataagttctctgttagtatttacccccttctggttgaatgcagttctgccttgtatgtc |
227 |
Q |
| |
|
||||||||||||| | |||| ||||||||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
49879585 |
aataataagttcttttttagcatttaccccctcctggatgaatccagttctgccttgtatgtc |
49879523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 46520428 - 46520370
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatcaatagga |
63 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
46520428 |
catctgtcccctcttggttgaatccaattttattttgtttgtcatctacatcaatagga |
46520370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 46520225 - 46520175
Alignment:
| Q |
7 |
tctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca |
57 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
46520225 |
tctgtcccctcgtggttgaatccaattcttccttgtatgtcctcttcatca |
46520175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 54654489 - 54654437
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca |
57 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||| ||||| |||| |
|
|
| T |
54654489 |
catctgtcccctcctggttgaattcaatcccatcttgtttgtgctctatatca |
54654437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 18134221 - 18134169
Alignment:
| Q |
5 |
catctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca |
57 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||| || |||||||| ||||| |
|
|
| T |
18134221 |
catctgtcccctcgtggttgaatccaatttcgtctagtgtgtcctcttcatca |
18134169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University