View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1455_high_9 (Length: 307)

Name: NF1455_high_9
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1455_high_9
NF1455_high_9
[»] chr3 (1 HSPs)
chr3 (14-307)||(50235364-50235657)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 50235657 - 50235364
Alignment:
Q  14 cctacattgcaggctagcaccgttttgaatagtgaattctttactcaaaacacataaagttatgcaccataaaacgtatgtaaagaatccacatcaatca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235657 cctacattgcaggctagcaccgttttgaatagtgaattctttactcaaaacacataaagttatgcaccataaaacgtatgtaaagaatccacatcaatca 50235558  T
Q  114 ttnnnnnnnngtgagagatatattcaatctgaacaaacgaatcccataagcacaaatcaaggtgttacattatatattgtaacaaattaattaatttatc 213  Q
    ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235557 ttaaaaaaaagtgagagatatattcaatctgaacaaacgaatcccataagcacaaatcaaggtgttacattatatattgtaacaaattaattaatttatc 50235458  T
Q  214 ccttccaatcaatattgtttcattttctctctagaaatacattatataacgcttacaaagagacaaaaatggaagcaaaggcaataacagcacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235457 ccttccaatcaatattgtttcattttctctctagaaatacattatataacgcttacaaagagacaaaaatggaagcaaaggcaataacagcacc 50235364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University