View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1455_low_12 (Length: 288)

Name: NF1455_low_12
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1455_low_12
NF1455_low_12
[»] chr4 (11 HSPs)
chr4 (1-288)||(52732747-52733056)
chr4 (215-288)||(56422922-56422995)
chr4 (217-288)||(31817124-31817195)
chr4 (215-288)||(21045289-21045360)
chr4 (215-288)||(43421047-43421120)
chr4 (217-288)||(54512179-54512250)
chr4 (215-281)||(34096179-34096245)
chr4 (215-288)||(50072407-50072483)
chr4 (215-288)||(44855400-44855473)
chr4 (215-271)||(7905931-7905987)
chr4 (215-271)||(38510180-38510236)
[»] chr5 (10 HSPs)
chr5 (215-288)||(4967411-4967484)
chr5 (215-288)||(14979971-14980044)
chr5 (215-288)||(15400332-15400405)
chr5 (215-288)||(31889879-31889952)
chr5 (234-288)||(4011599-4011653)
chr5 (215-281)||(31557260-31557326)
chr5 (215-275)||(27652239-27652299)
chr5 (57-108)||(16388388-16388439)
chr5 (218-272)||(33741829-33741883)
chr5 (83-170)||(15549671-15549759)
[»] chr6 (6 HSPs)
chr6 (215-288)||(32258872-32258945)
chr6 (215-288)||(23936503-23936576)
chr6 (215-288)||(34439328-34439401)
chr6 (215-288)||(26669018-26669091)
chr6 (224-288)||(19416896-19416960)
chr6 (243-281)||(29927374-29927412)
[»] chr8 (10 HSPs)
chr8 (217-288)||(2067859-2067930)
chr8 (215-288)||(24732107-24732180)
chr8 (218-288)||(7612656-7612726)
chr8 (215-281)||(9022562-9022628)
chr8 (215-288)||(27109740-27109813)
chr8 (217-288)||(11335961-11336032)
chr8 (215-288)||(1774010-1774083)
chr8 (216-277)||(11257709-11257770)
chr8 (249-281)||(6839373-6839405)
chr8 (215-275)||(7129454-7129514)
[»] chr2 (7 HSPs)
chr2 (222-288)||(4840654-4840720)
chr2 (215-288)||(40410602-40410675)
chr2 (222-286)||(43460931-43460995)
chr2 (248-288)||(44228625-44228665)
chr2 (72-115)||(5867766-5867809)
chr2 (215-275)||(4566041-4566101)
chr2 (215-271)||(14286096-14286152)
[»] scaffold0194 (1 HSPs)
scaffold0194 (216-288)||(8308-8380)
[»] chr1 (8 HSPs)
chr1 (222-288)||(52403635-52403701)
chr1 (215-288)||(10690875-10690948)
chr1 (215-288)||(50158238-50158311)
chr1 (218-288)||(1430459-1430529)
chr1 (215-288)||(1429026-1429099)
chr1 (224-281)||(43929850-43929907)
chr1 (215-271)||(34032009-34032065)
chr1 (215-271)||(34047162-34047218)
[»] chr3 (12 HSPs)
chr3 (215-288)||(790232-790305)
chr3 (215-288)||(26965428-26965501)
chr3 (216-281)||(50420389-50420454)
chr3 (236-288)||(34060025-34060077)
chr3 (222-288)||(53716163-53716229)
chr3 (233-288)||(19552692-19552747)
chr3 (215-281)||(6084747-6084813)
chr3 (215-281)||(42857011-42857077)
chr3 (236-288)||(37225536-37225588)
chr3 (215-277)||(31290894-31290956)
chr3 (212-281)||(43580646-43580715)
chr3 (248-288)||(647545-647585)
[»] chr7 (7 HSPs)
chr7 (234-288)||(41905874-41905928)
chr7 (215-288)||(34002052-34002125)
chr7 (218-288)||(36447534-36447604)
chr7 (88-164)||(18777407-18777484)
chr7 (68-164)||(35397481-35397578)
chr7 (249-281)||(3680877-3680909)
chr7 (248-288)||(18886805-18886845)
[»] scaffold0580 (2 HSPs)
scaffold0580 (215-288)||(1733-1806)
scaffold0580 (215-288)||(9472-9545)
[»] scaffold0119 (1 HSPs)
scaffold0119 (215-288)||(1702-1775)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 52733056 - 52732747
Alignment:
Q  1 agggtattagataaaagaataaaaaggtaatatacaaacttaaagtgttttttattg------------------aaataaagtttatatatagacatca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||    
T  52733056 agggtattagataaaagaataaaaaggtaatatacaaacttaaagtgttttttattggtgcatcttataacaaagaaataaagtttatatatagacatca 52732957  T
Q  83 ctctacttgtctcgcacttcaagaaacaatattatggtctacaaaacttgcaaacaagaaagtaaagaagtgaaggaaccactttactgataaaattgat 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52732956 ctctacttgtctcgcacttcaagaaacaatattatggtctacaaaacttgcaagcaagaaagtaaagaagtgaaggaaccactttactgataaaattgat 52732857  T
Q  183 tgtcttgcactatctatcttctattctta----cccccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatc 278  Q
    ||||||||||||||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52732856 tgtcttgcactatctatcttctattcttttactccctcgttttaaaatgagtgacgttttaggctttgacacatagattaaaaaatggaatgaaataatc 52732757  T
Q  279 attggatata 288  Q
    ||||||||||    
T  52732756 attggatata 52732747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 56422922 - 56422995
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  56422922 ccgtttcaaaatgagtgtcgctttaggctttgacacacagattaagaaatcgaatgaaataatcattggatata 56422995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 31817124 - 31817195
Alignment:
Q  217 gttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||| ||||| |||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  31817124 gtttcaaaattagtgtcgctttaggctttgacacacaaattaagaaatggaatgaaataatcattggatata 31817195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 21045360 - 21045289
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || ||||||||||||||||  ||||||  |||||||||||||||||||||||||||    
T  21045360 ccgtttcaaaatgagtgtcgctttaggctttgacaca--gattaaggaatggaatgaaataatcattggatata 21045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 43421047 - 43421120
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| ||||||||||  | ||||  ||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  43421047 ccgtttcaaaatgagtgttgctttaaactttggcacacaaattaagaaatggaatgaaataatcattggatata 43421120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 54512250 - 54512179
Alignment:
Q  217 gttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||| |||||||||  || ||||| |||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  54512250 gtttcaaaatgagtatcgctttagtctttgacacacatattaagaaatgaaatgaaataataattggatata 54512179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 34096245 - 34096179
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    ||||||||| ||||||| ||||||||||  |  |||||| ||||||||||| |||||||||||||||    
T  34096245 ccgttttaagatgagtgtcgttttaggcaattgcacacaaattaaaaaatgaaatgaaataatcatt 34096179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 50072483 - 50072407
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagatt---aaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || ||||| |||||  |||||||||   || ||||||||||||||||||||||||||||    
T  50072483 ccgtttcaaaatgagtgtcgctttagactttggtacacagatttataagaaatggaatgaaataatcattggatata 50072407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 44855473 - 44855400
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||| | || |||| |||||| |||||| ||||| |||| ||||||||||||||||| |||||    
T  44855473 ccgtttcaaaatgagcgtcgctttacgctttggcacacaaattaagaaatagaatgaaataatcattgaatata 44855400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 7905931 - 7905987
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatga 271  Q
    ||||||||||||||||| |||||||||  || ||||||| ||||| ||||| |||||    
T  7905931 ccgttttaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatga 7905987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 38510180 - 38510236
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatga 271  Q
    ||||||||||||||||| ||||||||   || ||||||| ||||||||||| |||||    
T  38510180 ccgttttaaaatgagtgtcgttttagatctttacacacatattaaaaaatgcaatga 38510236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 4967411 - 4967484
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4967411 ccgtttcaaaatgagtgtcgctttaggctttgacacacagattaagaaatggaatgaaataatcattggatata 4967484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 14979971 - 14980044
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  14979971 ccgtttcaaaatgagtgtcgctttaggctttggcacacagattaagaaatggaatgaaataatcattggatata 14980044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 15400405 - 15400332
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| |||||||||  ||| ||||||||||||||||| |||||||||||| ||| ||||||    
T  15400405 ccgttttaaaatgagtgtcgttttaggtgttggcacacagattaaaaaattgaatgaaataattattagatata 15400332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 31889952 - 31889879
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| ||||||||||  | |||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  31889952 ccgtttcaaaatgagtgtagctttaggctttgacacacagattaagaaatggaatgaaataattattgaatata 31889879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 4011599 - 4011653
Alignment:
Q  234 gttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  4011599 gttttaggctttgacacatagattaagaaatggaatcaaataatcattggatata 4011653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 31557260 - 31557326
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    ||||||||||| ||||| |||||||||  |||| ||||| ||||| |||| ||||||||||||||||    
T  31557260 ccgttttaaaacgagtgtcgttttaggtgttgatacacatattaagaaatagaatgaaataatcatt 31557326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 27652239 - 27652299
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaata 275  Q
    ||||||||||||||||| || |||||||  | ||||||||||||| ||||||||| |||||    
T  27652239 ccgttttaaaatgagtgtcgctttaggcaattacacacagattaagaaatggaataaaata 27652299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 16388439 - 16388388
Alignment:
Q  57 gaaataaagtttatatatagacatcactctacttgtctcgcacttcaagaaa 108  Q
    |||||||||  |||||||||||||||| || ||||||| |||||||||||||    
T  16388439 gaaataaagcctatatatagacatcacgctgcttgtcttgcacttcaagaaa 16388388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 33741883 - 33741829
Alignment:
Q  218 ttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaa 272  Q
    |||||||||||||| |||||||||   || ||||||||||||||||| |||||||    
T  33741883 ttttaaaatgagtgtcgttttaggtgctggcacacagattaaaaaatagaatgaa 33741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 15549671 - 15549759
Alignment:
Q  83 ctctacttgtctcgcacttcaagaaacaatattatggtctacaaaacttg-caaacaagaaagtaaagaagtgaaggaaccactttact 170  Q
    |||| ||| ||| |||||||||||||||| ||| ||| |||||| ||||| ||  |||||||| ||| ||||||| ||||||| |||||    
T  15549671 ctcttcttctctagcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccaccttact 15549759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 32258945 - 32258872
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  32258945 ccgttttaaaatgagtgtcgctttaggctttgacacacagattaagaaatcgattgaaataatcattggatata 32258872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 23936503 - 23936576
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| |||||||||  |||  ||||| ||||| ||||||||||||||||||||| ||||||    
T  23936503 ccgttttaaaatgagtgtcgttttaggtgttgggacacatattaagaaatggaatgaaataatcattagatata 23936576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 34439328 - 34439401
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| |||||||||  |||||||| | ||||| ||||| ||||||||||||||| ||||||    
T  34439328 ccgttttaaaatgagtgtcgttttaggtgttgacacataaattaagaaatgaaatgaaataatcattagatata 34439401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 26669018 - 26669091
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| || ||||||||||  |||| ||||||| ||||  ||||||||||| ||||||||||    
T  26669018 ccgttttaaaatgagtgtcgctttaggctttagcacaaagattaagaaatataatgaaataattattggatata 26669091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 19416960 - 19416896
Alignment:
Q  224 aatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||| || ||||| ||| ||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  19416960 aatgaatgtcgtttaaggttttgatacacagattaaaaaatgaaatgaaataatcattagatata 19416896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 29927412 - 29927374
Alignment:
Q  243 tttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  29927412 tttgacacacagattaaaaaatagaatgaaataatcatt 29927374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 2067930 - 2067859
Alignment:
Q  217 gttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  2067930 gttttaaaatgagtgtcgctttaggctttgacacatagattaagaaatggaatgaaataatcatttgatata 2067859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 24732180 - 24732107
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| || | ||| |||||||| ||||||||| |||| |||||||||| ||||||||||||    
T  24732180 ccgttttaaaatgagtgtcgctgtagactttgacatacagattaagaaattgaatgaaatagtcattggatata 24732107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 7612726 - 7612656
Alignment:
Q  218 ttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||  | |||||  |||| |||||||||||| |||| |||||||||||||||||||||||    
T  7612726 ttttaaaatgagtgttgctttagattttggcacacagattaagaaatagaatgaaataatcattggatata 7612656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 9022628 - 9022562
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    ||||||||||||||||| |||||||| |  |  ||||||||||||||||||||||||| ||||||||    
T  9022628 ccgttttaaaatgagtgtcgttttagccaattgcacacagattaaaaaatggaatgaattaatcatt 9022562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 27109740 - 27109813
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| |||||||||  ||| |||||| ||||| |||| |||||||||||||||| ||||||    
T  27109740 ccgtttcaaaatgagtgtcgttttaggtgttggcacacatattaagaaatagaatgaaataatcattagatata 27109813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 11335961 - 11336032
Alignment:
Q  217 gttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||| ||||||||||   ||||||||||||||||||||||||| ||||| |||||| ||| |||| ||||||    
T  11335961 gtttcaaaatgagtgttattttaggctttgacacacagattaagaaatgtaatgaagtaaccattcgatata 11336032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 1774010 - 1774083
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| |  ||||||||||| | |||||||||| |||| |||||| ||||||||| ||||||    
T  1774010 ccgtttcaaaatgagtgtcactttaggctttggcgcacagattaagaaatagaatgatataatcatttgatata 1774083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 11257770 - 11257709
Alignment:
Q  216 cgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataat 277  Q
    ||||||| |||||||| ||||| ||  ||||||||||| ||||| |||||||||||||||||    
T  11257770 cgttttacaatgagtgccgtttaagattttgacacacaaattaagaaatggaatgaaataat 11257709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 6839405 - 6839373
Alignment:
Q  249 acacagattaaaaaatggaatgaaataatcatt 281  Q
    |||||||||||||||||||||||||||||||||    
T  6839405 acacagattaaaaaatggaatgaaataatcatt 6839373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 7129514 - 7129454
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaata 275  Q
    ||||||||||||||||| || |  ||||||||||| | ||||||| |||||||||||||||    
T  7129514 ccgttttaaaatgagtgtcgctgcaggctttgacatatagattaagaaatggaatgaaata 7129454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 4840654 - 4840720
Alignment:
Q  222 aaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  4840654 aaaatgagtgtcgttttaggctttggcacacatattaagaaatggaatgaaataatcattggatata 4840720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 40410675 - 40410602
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||| |||| || ||||||| ||| |||||||||||| ||||||||||| ||||||||||||||||    
T  40410675 ccgttttaaaataagtgtcgctttaggcgttgtcacacagattaagaaatggaatgacataatcattggatata 40410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 43460995 - 43460931
Alignment:
Q  222 aaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggata 286  Q
    |||||||||| ||||||| |||||| ||||| | |||| ||||||||||||||||||||||||||    
T  43460995 aaaatgagtgtcgttttaagctttggcacacggtttaagaaatggaatgaaataatcattggata 43460931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 44228665 - 44228625
Alignment:
Q  248 cacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  44228665 cacacggattaaaaaatggaatgaaataatcattagatata 44228625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 5867809 - 5867766
Alignment:
Q  72 tatagacatcactctacttgtctcgcacttcaagaaacaatatt 115  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||    
T  5867809 tatagacttcactctacttatcttgcacttcaagaaacaatatt 5867766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 4566041 - 4566101
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaata 275  Q
    ||||||||||||||||| || ||||| |  | ||||||||||||||||||| ||| |||||    
T  4566041 ccgttttaaaatgagtgtcgctttagtcaattacacacagattaaaaaatgtaataaaata 4566101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 14286152 - 14286096
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatga 271  Q
    ||||||||||||||||| |||||||||  || ||||||| ||||| ||||| |||||    
T  14286152 ccgttttaaaatgagtgtcgttttaggagtttacacacatattaagaaatgcaatga 14286096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 8380 - 8308
Alignment:
Q  216 cgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||| ||||||| || || |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  8380 cgtttcaaaatgaatgtcgctttaggttttggcacacagattaaaaaatggaatgaaataatcattggatata 8308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 52403701 - 52403635
Alignment:
Q  222 aaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||| || || |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  52403701 aaaatgaatgtcgctttaggctttgacatacagattaagaaatggaatgaaataatcattggatata 52403635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 10690875 - 10690948
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||| |||||||| ||||| ||| |||| |||||| ||||| ||||| ||||||||||||||| ||||||    
T  10690875 ccgttttacaatgagtgtcgtttaaggttttgccacacatattaagaaatgaaatgaaataatcattagatata 10690948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 50158238 - 50158311
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| |  |||||||||||||||| ||||||| ||||  |||| |||||||||||||||||    
T  50158238 ccgtttcaaaatgagtgtcactttaggctttgacacatagattaagaaatataatgcaataatcattggatata 50158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 1430459 - 1430529
Alignment:
Q  218 ttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||||| |||||||||  ||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  1430459 ttttaaaatgagtgtcgttttaggtgttggcacacagattaagaaatttaatgaaataataattagatata 1430529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 1429099 - 1429026
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||||||||  ||||||||  |||||||| | ||||| |||| |||||||||||| ||| ||||||    
T  1429099 ccgttttaaaatgagtgtggttttaggtgttgacacatatattaagaaattgaatgaaataattattagatata 1429026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 43929907 - 43929850
Alignment:
Q  224 aatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    |||| ||| ||||| ||| ||||||||||| ||||| |||| ||||||||||||||||    
T  43929907 aatgtgtgtcgtttaaggttttgacacacaaattaagaaattgaatgaaataatcatt 43929850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 34032009 - 34032065
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatga 271  Q
    ||||||||||||||||| |||||||||  || ||| ||| ||||||||||| |||||    
T  34032009 ccgttttaaaatgagtgtcgttttaggtgtttacatacatattaaaaaatgcaatga 34032065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 34047162 - 34047218
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatga 271  Q
    ||||||||||||||||| |||||||||  || ||||||| ||||| ||||| |||||    
T  34047162 ccgttttaaaatgagtgtcgttttaggtgtttacacacatattaagaaatgcaatga 34047218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 790305 - 790232
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||| ||||  |||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||    
T  790305 ccgttttaaaattagtgttgttttaggctttgacacacatattaagaaatgtaatgaaataatcattgaatata 790232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 26965428 - 26965501
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||| |||| |  |||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  26965428 ccgttttaaaataagtgtcactttaggctttgacacacagattaagaaataaaatgaaataatcattggatata 26965501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 50420454 - 50420389
Alignment:
Q  216 cgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    ||||||||||| |||| ||||| ||  |||||||||||||||||||||| ||||||||||||||||    
T  50420454 cgttttaaaataagtgtcgtttaagattttgacacacagattaaaaaatagaatgaaataatcatt 50420389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 34060077 - 34060025
Alignment:
Q  236 tttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  34060077 tttaggctttggcacacagattaagaaatggaatgaaataataattggatata 34060025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 53716229 - 53716163
Alignment:
Q  222 aaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||| || ||||| |||||||||| | ||||| ||||| ||||||||||||||||||||||    
T  53716229 aaaatgagtgtcgctttagactttgacacataaattaagaaatgaaatgaaataatcattggatata 53716163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 19552747 - 19552692
Alignment:
Q  233 cgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||| ||||| |||||| ||||| ||||| ||||||||||||||||||||||    
T  19552747 cgttttagactttggcacacaaattaagaaatgaaatgaaataatcattggatata 19552692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 6084747 - 6084813
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    |||||| | |||||||| ||||| ||| ||| ||||||| ||||||||||| |||||||||||||||    
T  6084747 ccgtttcacaatgagtgtcgtttaaggttttaacacacaaattaaaaaatgaaatgaaataatcatt 6084813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 42857011 - 42857077
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    ||||||||||||||||| ||||||||||  | |||||||||||||  |||  |||||||||||||||    
T  42857011 ccgttttaaaatgagtgtcgttttaggcaattacacacagattaaggaatcaaatgaaataatcatt 42857077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 37225536 - 37225588
Alignment:
Q  236 tttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||||| | ||||||| ||||  ||||||||||||||||||||||    
T  37225536 tttaggctttgacatatagattaagaaatacaatgaaataatcattggatata 37225588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 31290894 - 31290956
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataat 277  Q
    ||||||||||||||||| |||||||| |  | |||||||||||||  |||| |||||||||||    
T  31290894 ccgttttaaaatgagtgtcgttttagccaattacacacagattaaggaatgaaatgaaataat 31290956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 43580715 - 43580646
Alignment:
Q  212 cccccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcatt 281  Q
    |||||||||||||||||| |||| ||||| |  |  ||||||||||||  ||| ||||||||||||||||    
T  43580715 cccccgttttaaaatgagcgacgctttagccaattgcacacagattaaggaatagaatgaaataatcatt 43580646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 647545 - 647585
Alignment:
Q  248 cacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||| ||||| ||||||||||||||| ||||||    
T  647545 cacacagattaagaaatgaaatgaaataatcattagatata 647585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 41905874 - 41905928
Alignment:
Q  234 gttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  41905874 gttttaggctttgacacacagattaagaaatgaactgaaataatcattggatata 41905928  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 34002052 - 34002125
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||  |  ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34002052 ccgtttcaaaatgagtctctctttcggctttgacacacagattaagaaatgaaatgaaataatcattggatata 34002125  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 36447534 - 36447604
Alignment:
Q  218 ttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||| ||||  |||||||||||||  | ||||||||| ||||||||||||||||| | ||||||||    
T  36447534 ttttaaaataagtgttgttttaggctttggtatacagattaagaaatggaatgaaataattactggatata 36447604  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 18777407 - 18777484
Alignment:
Q  88 cttgtctcgcacttcaagaaacaatattatggtctacaaaacttg-caaacaagaaagtaaagaagtgaaggaaccac 164  Q
    ||||||| | ||||||||||||||   ||||||||| || ||||| |||| ||||||||||| |||||||||||||||    
T  18777407 cttgtcttgaacttcaagaaacaaccctatggtctataagacttgtcaaataagaaagtaaacaagtgaaggaaccac 18777484  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 35397481 - 35397578
Alignment:
Q  68 tatatatagacatcactctacttgtctcgcacttcaagaaacaatattatggtctacaaaacttg-caaacaagaaagtaaagaagtgaaggaaccac 164  Q
    ||||||||| ||||| |||||||||||  |||||||||||||||  || | | |||| ||||||| |||||| || |||||| |||||||| ||||||    
T  35397481 tatatataggcatcattctacttgtcttacacttcaagaaacaaccttcttgcctacgaaacttgtcaaacatgatagtaaacaagtgaagaaaccac 35397578  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 3680877 - 3680909
Alignment:
Q  249 acacagattaaaaaatggaatgaaataatcatt 281  Q
    |||||||||||||||||||||||||||||||||    
T  3680877 acacagattaaaaaatggaatgaaataatcatt 3680909  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 18886845 - 18886805
Alignment:
Q  248 cacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  18886845 cacacagactaagaaatggaatgaaataatcattagatata 18886805  T

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Target: scaffold0580 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 1806 - 1733
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || ||||| | ||| |||| ||||||| ||||| ||||||||||||||||||||||    
T  1806 ccgtttcaaaatgagtgtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatata 1733  T

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Target: scaffold0580; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 9545 - 9472
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    |||||| |||||||||| || ||||| | ||| |||| ||||||| ||||| ||||||||||||||||||||||    
T  9545 ccgtttcaaaatgagtgtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatata 9472  T

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Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 1775 - 1702
Alignment:
Q  215 ccgttttaaaatgagtgacgttttaggctttgacacacagattaaaaaatggaatgaaataatcattggatata 288  Q
    ||||||||||||||||| || ||||||||||  |||| ||||||| ||||  ||||||||||| ||||||||||    
T  1775 ccgttttaaaatgagtgtcgctttaggctttagcacaaagattaagaaatataatgaaataattattggatata 1702  T

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