View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1455_low_13 (Length: 250)

Name: NF1455_low_13
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1455_low_13
NF1455_low_13
[»] chr1 (7 HSPs)
chr1 (11-250)||(34668595-34668834)
chr1 (32-156)||(17420079-17420207)
chr1 (59-125)||(1662481-1662546)
chr1 (60-124)||(4276735-4276799)
chr1 (174-230)||(24460313-24460369)
chr1 (67-125)||(16982034-16982091)
chr1 (69-125)||(870962-871017)
[»] chr7 (6 HSPs)
chr7 (39-125)||(1431406-1431491)
chr7 (92-152)||(33894562-33894622)
chr7 (40-154)||(24975792-24975906)
chr7 (60-156)||(49060448-49060544)
chr7 (198-230)||(259710-259742)
chr7 (82-149)||(46223146-46223212)
[»] chr2 (6 HSPs)
chr2 (61-153)||(25790037-25790127)
chr2 (176-230)||(1830143-1830197)
chr2 (53-129)||(43431538-43431613)
chr2 (92-156)||(31740025-31740091)
chr2 (64-156)||(29430668-29430759)
chr2 (77-156)||(35329885-35329964)
[»] chr5 (11 HSPs)
chr5 (38-125)||(26516180-26516270)
chr5 (63-156)||(35135728-35135821)
chr5 (174-225)||(14706201-14706252)
chr5 (37-125)||(20982233-20982324)
chr5 (92-150)||(37063146-37063205)
chr5 (178-232)||(4619813-4619867)
chr5 (174-224)||(10771806-10771856)
chr5 (26-56)||(11095624-11095654)
chr5 (174-224)||(19177547-19177597)
chr5 (77-156)||(19177404-19177483)
chr5 (179-227)||(42034167-42034215)
[»] scaffold0590 (1 HSPs)
scaffold0590 (60-156)||(1140-1236)
[»] scaffold0275 (1 HSPs)
scaffold0275 (60-156)||(2739-2835)
[»] chr4 (6 HSPs)
chr4 (92-156)||(21593078-21593142)
chr4 (187-236)||(25571374-25571423)
chr4 (175-227)||(19394864-19394916)
chr4 (174-230)||(52333700-52333756)
chr4 (92-156)||(53155204-53155267)
chr4 (77-156)||(54325103-54325182)
[»] chr3 (6 HSPs)
chr3 (174-227)||(22667505-22667558)
chr3 (174-227)||(22724144-22724197)
chr3 (77-122)||(25183089-25183134)
chr3 (174-227)||(26990769-26990822)
chr3 (60-125)||(45433037-45433102)
chr3 (177-229)||(31337325-31337377)
[»] chr8 (5 HSPs)
chr8 (174-221)||(2487929-2487976)
chr8 (60-125)||(14482110-14482174)
chr8 (77-125)||(5226527-5226574)
chr8 (61-125)||(39392759-39392822)
chr8 (202-230)||(43717846-43717874)
[»] chr6 (5 HSPs)
chr6 (79-156)||(6310290-6310368)
chr6 (53-150)||(7354105-7354202)
chr6 (180-221)||(4308885-4308926)
chr6 (60-156)||(10452426-10452522)
chr6 (53-125)||(8349762-8349833)
[»] scaffold0091 (1 HSPs)
scaffold0091 (77-125)||(5944-5991)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 34668595 - 34668834
Alignment:
Q  11 ataattctgtaatttagattaagccatgtttggataaacaacttaagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcg 110  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| || ||||||||     
T  34668595 ataattctataattcagattaagccatgttcggataaacaacttaagagcttatagtataagcgcttatcatgtaagtgttctatgtgtagactatttct 34668694  T
Q  111 ataacgaaagataaagtaagtcgaactactttcatataagctataataagctcttaccaacagctcacaagtgctcatgtcagtacgtaaactcaaataa 210  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  34668695 ataacgaaagataaagtaagttgaactactttcatataagctataataagctcttccaaacagctcacaagtgctcatgtcagtacataaactcaaataa 34668794  T
Q  211 gccaatccaaataggccctataactatttacaatattgaa 250  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  34668795 gccaatccaaataggccctataattctttacaatattgaa 34668834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 17420079 - 17420207
Alignment:
Q  32 agccatgtttggataaacaacttaa----gagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt 127  Q
    ||||||||||||||||||| |||||    | | ||||||||||||||| || || ||||||  || |||||||||||||||  ||||  ||||||||| |    
T  17420079 agccatgtttggataaacagcttaattaagtgattatagtataagcgcttagcacataagtactt-atgtataaactatttttataagaaaagataaaat 17420177  T
Q  128 aa-gtcgaactactttcatataagctataa 156  Q
    || ||||||| | |||||||||||||||||    
T  17420178 aaagtcgaacaattttcatataagctataa 17420207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 1662481 - 1662546
Alignment:
Q  59 gcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||| |||||||||  | |||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  1662481 gcttgtagtataagtacatatcatataagtgttt-atgtataaactacttctataacgaaagataaa 1662546  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 4276799 - 4276735
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataa 124  Q
    ||||||| |||| | | |||||||||| ||||||| |||||||||||||| ||||| ||||||||    
T  4276799 cttatagcataatcacttatcatataaatgttttaagtataaactatttctataacaaaagataa 4276735  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 24460369 - 24460313
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcccta 230  Q
    ||||||||||||||||||||||  |||  ||||||||| ||||||||| ||||||||    
T  24460369 ctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaacaggcccta 24460313  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 16982091 - 16982034
Alignment:
Q  67 tataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||| || |||||||||||||||| ||||||||  |||||||||||| |||||||||    
T  16982091 tataagagcttatcatataagtgttt-atgtataacttatttcgataacaaaagataaa 16982034  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 870962 - 871017
Alignment:
Q  69 taagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    ||||||| ||||||||||||| || |||||||||||||||  ||||| |||||||||    
T  870962 taagcgcttatcatataagtgctt-atgtataaactatttttataacaaaagataaa 871017  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 1431491 - 1431406
Alignment:
Q  39 tttggataaacaacttaagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||||||||||||||||  ||||||| ||||| || ||||||||||||| |||||||||||  |||||| |||| |||| |||||    
T  1431491 tttggataaacaacttaagttcttatagcataagtgcttatcatataagtg-tttatgtataagttatttccataatgaaaaataaa 1431406  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 33894562 - 33894622
Alignment:
Q  92 ttatgtataaactatttcgataacgaaagataaagtaagtcgaactactttcatataagct 152  Q
    |||||||||| ||||||| ||||| ||||||||| |||||| ||||  |||||||||||||    
T  33894562 ttatgtataagctatttctataacaaaagataaaataagtcaaactgttttcatataagct 33894622  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 24975792 - 24975906
Alignment:
Q  40 ttggataaacaacttaagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaacta 138  Q
    |||||||||||||||||| |||| ||| ||| | || |||||||||||||  | |||||||| ||| ||| ||||| ||||||||| | ||| ||||||     
T  24975792 ttggataaacaacttaagcgcttgtagcatatgtgcttatcatataagtg-ctgatgtataatctacttctataacaaaagataaaataaaggcgaactg 24975890  T
Q  139 ctttcatataagctat 154  Q
     ||| |||||||||||    
T  24975891 tttttatataagctat 24975906  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 49060448 - 49060544
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    ||||||||||||  || |||||||||||| ||| |||||||| ||||||| ||||| ||| ||||| | ||||| || || ||| |||||||||||||    
T  49060448 cttatagtataatggcttatcatataagtattt-atgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataa 49060544  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 259742 - 259710
Alignment:
Q  198 taaactcaaataagccaatccaaataggcccta 230  Q
    ||||||||||||||||||||||| |||||||||    
T  259742 taaactcaaataagccaatccaagtaggcccta 259710  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 46223212 - 46223146
Alignment:
Q  82 tataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataa 149  Q
    ||||||||||| |||||||| ||||||| ||||| ||||||||| | ||||||||||| ||||||||||    
T  46223212 tataagtgttt-atgtataagctatttccataacaaaagataaattaaagtcgaacta-tttcatataa 46223146  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 25790037 - 25790127
Alignment:
Q  61 ttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagcta 153  Q
    ||||||||||||||| |||||||||||   |||||||||||  |||||| ||||  ||||||||||| ||||| ||||  ||||||||||||||    
T  25790037 ttatagtataagcgcttatcatataag---tttatgtataatatatttctataaaaaaagataaagtgaagtcaaactgttttcatataagcta 25790127  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 1830143 - 1830197
Alignment:
Q  176 cacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcccta 230  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||| ||||||||    
T  1830143 cacaagtgcttatgtcagtaaataaactcaaataagtcaatccaaacaggcccta 1830197  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 43431613 - 43431538
Alignment:
Q  53 ttaagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagtaa 129  Q
    ||||| |||||||| ||| |||| ||||||||||||| || ||||||||  |||||| ||||| |||||||||||||    
T  43431613 ttaagcgcttataggataggcgcttatcatataagtg-ttaatgtataagttatttcaataacaaaagataaagtaa 43431538  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 31740091 - 31740025
Alignment:
Q  92 ttatgtataaa-ctatttcgataacgaaagataaagtaa-gtcgaactactttcatataagctataa 156  Q
    ||||||||||| ||||||| ||||| ||||||||| ||| ||| ||||| |||||||||||||||||    
T  31740091 ttatgtataaagctatttctataactaaagataaaataaagtcaaactattttcatataagctataa 31740025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 29430668 - 29430759
Alignment:
Q  64 tagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagtaagtcgaactactttcatataagctataa 156  Q
    |||||||||||  ||||||| ||| |||| |||||||| ||||||| ||||| |||| ||||  ||||| ||||  |||| ||||||||||||    
T  29430668 tagtataagcgtttatcatacaagggttt-atgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctataa 29430759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 35329964 - 35329885
Alignment:
Q  77 tatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    |||||||||||||||| ||| |||||||||||| |||||  |||||||| | ||||| | || |||||| |||||||||||    
T  35329964 tatcatataagtgttt-atgcataaactatttccataacataagataaaataaagtcaagctgctttcacataagctataa 35329885  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 26516180 - 26516270
Alignment:
Q  38 gtttggataaacaacttaa----gagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||||||||||||||||    | |||||||| |||||||| |||||||||||||  |||||||||| ||||||| | ||| |||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtg-cttatgtataagctatttctaaaacaaaagataaa 26516270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 35135821 - 35135728
Alignment:
Q  63 atagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagtaa-gtcgaactactttcatataagctataa 156  Q
    |||| ||||| || || ||||||||||||| ||||||||  |||||| ||||| ||||||||| ||| ||| ||||| |||||||||||||||||    
T  35135821 atagcataagtgcttaacatataagtgttt-atgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataa 35135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 14706252 - 14706201
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaatagg 225  Q
    |||||||||| | ||||||||| |||| |||||||||| |||||||||||||    
T  14706252 ctcacaagtgtttatgtcagtaggtaagctcaaataagtcaatccaaatagg 14706201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 20982324 - 20982233
Alignment:
Q  37 tgtttggataaacaactt----aagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    ||||||||||||||||||    ||| |||||||| ||||| || |||||||||||||  |||||||||| ||||||| ||||| || ||||||    
T  20982324 tgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtg-cttatgtataagctatttctataacaaaggataaa 20982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 37063205 - 37063146
Alignment:
Q  92 ttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataag 150  Q
    |||||||||||||||||| ||||| ||||||||| | ||||| ||||| |||||||||||    
T  37063205 ttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 4619813 - 4619867
Alignment:
Q  178 caagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggccctata 232  Q
    |||||||| ||||||| |  ||||| |||||||||||||||||| ||||||||||    
T  4619813 caagtgcttatgtcagcaaataaacacaaataagccaatccaaagaggccctata 4619867  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 10771856 - 10771806
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaatag 224  Q
    |||||||||||| ||| |||||  ||| |||||||||||||||||||||||    
T  10771856 ctcacaagtgcttatgccagtagataagctcaaataagccaatccaaatag 10771806  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 11095654 - 11095624
Alignment:
Q  26 agattaagccatgtttggataaacaacttaa 56  Q
    |||||||||||||||||||||||||||||||    
T  11095654 agattaagccatgtttggataaacaacttaa 11095624  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 19177547 - 19177597
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaatag 224  Q
    |||||||||| ||||| || || ||||||||||||||| ||||||||||||    
T  19177547 ctcacaagtgttcatgccaataggtaaactcaaataagtcaatccaaatag 19177597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 19177404 - 19177483
Alignment:
Q  77 tatcatataagtgttttatgtataaactatttcgataacgaaagat-aaagtaagtcgaactactttcatataagctataa 156  Q
    ||||||||||||| || |||||||||||||||| | |||  ||||| ||| |||||| ||||  |||||||||||||||||    
T  19177404 tatcatataagtgctt-atgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctataa 19177483  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 42034167 - 42034215
Alignment:
Q  179 aagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcc 227  Q
    ||||||| ||||||||| |||| ||||||||||| |||||||| |||||    
T  42034167 aagtgcttatgtcagtaggtaagctcaaataagctaatccaaacaggcc 42034215  T

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Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 1236 - 1140
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    ||||||| |||| || ||||||||||||||  |||||||||| ||||||| ||||| ||||||||| | ||||| ||||| | |||||||||| ||||    
T  1236 cttatagcataaacgtctatcatataagtg-cttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagccataa 1140  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 2739 - 2835
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    ||||||| |||| || ||||||||||||||  |||||||||| ||||||| ||||| ||||||||| | ||||| ||||| | |||||||||| ||||    
T  2739 cttatagcataaacgtctatcatataagtg-cttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagccataa 2835  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 21593142 - 21593078
Alignment:
Q  92 ttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    |||||||||||||||||| ||||| ||||||||| | ||||| ||||| |||||||||||||||||    
T  21593142 ttatgtataaactatttctataactaaagataaaataaagtc-aactattttcatataagctataa 21593078  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 25571374 - 25571423
Alignment:
Q  187 atgtcagtacgtaaactcaaataagccaatccaaataggccctataacta 236  Q
    |||||||||  |||||||||||||||||||||||| |||||||| |||||    
T  25571374 atgtcagtagataaactcaaataagccaatccaaacaggccctaaaacta 25571423  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 19394916 - 19394864
Alignment:
Q  175 tcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcc 227  Q
    |||||| ||| ||||||| ||  ||| ||||||||||||||||||||||||||    
T  19394916 tcacaaatgcccatgtcaatagataagctcaaataagccaatccaaataggcc 19394864  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 52333700 - 52333756
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcccta 230  Q
    |||||||||||| | |||||||  ||| |||||||||||||||| ||| ||||||||    
T  52333700 ctcacaagtgcttaggtcagtaaataagctcaaataagccaatcgaaacaggcccta 52333756  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 53155204 - 53155267
Alignment:
Q  92 ttatgtataaactatttcgataacgaaagataaagtaagtcgaactactttcatataagctataa 156  Q
    |||||||||| ||||||  ||||| |||||||||  ||||||||||| ||||||||| |||||||    
T  53155204 ttatgtataagctatttt-ataacaaaagataaataaagtcgaactattttcatatatgctataa 53155267  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 54325182 - 54325103
Alignment:
Q  77 tatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    ||||||||||||| ||  ||||||||||||||| || || ||||||||| | ||||| ||||  |||||||||||||||||    
T  54325182 tatcatataagtgcttg-tgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataa 54325103  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 22667505 - 22667558
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcc 227  Q
    |||||||||||| |||||||||  ||| |||||||||||||||| |||||||||    
T  22667505 ctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaataggcc 22667558  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 22724144 - 22724197
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcc 227  Q
    |||||||||||| |||||||||  ||| |||||||||||||||| |||||||||    
T  22724144 ctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaataggcc 22724197  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 25183134 - 25183089
Alignment:
Q  77 tatcatataagtgttttatgtataaactatttcgataacgaaagat 122  Q
    |||||||||||||||| |||||||||||||||  ||||| ||||||    
T  25183134 tatcatataagtgtttaatgtataaactatttttataacaaaagat 25183089  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 26990769 - 26990822
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggcc 227  Q
    |||||||||||| || |||||  | ||||||||||||||||||||||| |||||    
T  26990769 ctcacaagtgcttatatcagttggcaaactcaaataagccaatccaaacaggcc 26990822  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 45433102 - 45433037
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||||| ||||||  |||||||||||||||||| | || ||||||||| ||||  |||||||||    
T  45433102 cttatagtgtaagcgtttatcatataagtgttttaagaatgaactatttctataagaaaagataaa 45433037  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 31337377 - 31337325
Alignment:
Q  177 acaagtgctcatgtcagtacgtaaactcaaataagccaatccaaataggccct 229  Q
    ||||||||| |||||||||  |||||||||| || ||||||||||||| ||||    
T  31337377 acaagtgcttatgtcagtagataaactcaaacaaaccaatccaaatagaccct 31337325  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 2487976 - 2487929
Alignment:
Q  174 ctcacaagtgctcatgtcagtacgtaaactcaaataagccaatccaaa 221  Q
    |||||||||||| |||||||||  | ||||||||||||||||||||||    
T  2487976 ctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 14482110 - 14482174
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    ||||||| || || || ||||||||||||| || |||||||||||||||| ||||| |||||||||    
T  14482110 cttatagcattagtgcttatcatataagtgctt-atgtataaactatttctataacaaaagataaa 14482174  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 5226527 - 5226574
Alignment:
Q  77 tatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||||||||||||| |||||||||| ||||| ||||| |||||||||    
T  5226527 tatcatataagtgttt-atgtataaacaatttcaataacaaaagataaa 5226574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 39392822 - 39392759
Alignment:
Q  61 ttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||| ||||| || |||||||||||||  | |||||||||||||||| ||||| |||||||||    
T  39392822 ttatagcataagtgcttatcatataagtggct-atgtataaactatttctataacaaaagataaa 39392759  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 43717874 - 43717846
Alignment:
Q  202 ctcaaataagccaatccaaataggcccta 230  Q
    |||||||||||||||||||||||||||||    
T  43717874 ctcaaataagccaatccaaataggcccta 43717846  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 6310368 - 6310290
Alignment:
Q  79 tcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataagctataa 156  Q
    ||||||||||| ||||||||||| | ||||| ||||| |||||| |||| ||||| || |  |||||||||||||||||    
T  6310368 tcatataagtgctttatgtataatcaatttctataacaaaagatgaagtaaagtctaattgttttcatataagctataa 6310290  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 7354105 - 7354202
Alignment:
Q  53 ttaagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagt-aagtcgaactactttcatataag 150  Q
    ||||| |||||||| ||||  || | ||||| |||| ||| |||||||||||||||| ||||| ||||||||| | || |||||||| |||||||||||    
T  7354105 ttaagcgcttatagcataaatgcttttcatacaagt-tttcatgtataaactatttctataacaaaagataaaataaaatcgaactattttcatataag 7354202  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 4308885 - 4308926
Alignment:
Q  180 agtgctcatgtcagtacgtaaactcaaataagccaatccaaa 221  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  4308885 agtgcttatgtcagtagataaactcaaataagccaatccaaa 4308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 10452522 - 10452426
Alignment:
Q  60 cttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaagtaag-tcgaactactttcatataagctataa 156  Q
    ||||||| ||||| | ||||||||| |||| || |||||||| ||||||| ||||| ||| ||||| |||  || ||||| |||||||||||||||||    
T  10452522 cttatagcataagtggctatcatatcagtgctt-atgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataa 10452426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 8349833 - 8349762
Alignment:
Q  53 ttaagagcttatagtataagcgcctatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    ||||| |||||||| |||| | | ||||||||||||| ||| |||||||||||||||  |||| |||||||||    
T  8349833 ttaagcgcttatagcataaccacttatcatataagtg-tttgtgtataaactatttctctaacaaaagataaa 8349762  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 5944 - 5991
Alignment:
Q  77 tatcatataagtgttttatgtataaactatttcgataacgaaagataaa 125  Q
    |||||||||||||||| |||||||||| ||||| ||||| |||||||||    
T  5944 tatcatataagtgttt-atgtataaacaatttcaataacaaaagataaa 5991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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