View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1455_low_15 (Length: 246)
Name: NF1455_low_15
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 39512639 - 39512419
Alignment:
| Q |
17 |
actttctccacaatcacttgtacttcaagcaacaaaagtcagattccaatcattccatgnnnnnnnn-ctaacatttacttaataccattttggtccatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39512639 |
actttctccacaatcacttgtacttcaagcaacaaaagtcagattccaatcattccatgaaacaaaaactaacatttacttaataccattttggtccatt |
39512540 |
T |
|
| Q |
116 |
tgatgacccattaaatatattcaagattaagaatgaaaaagttagactttaagcacttaaatgaaatttaatgaccttggtaagagattaaaagaaaaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39512539 |
tgatgacccattaaatatattcaagattaagaatgaaaaggttagactttaagcacttaaatgaaatttaatgaccttggtaagagattaaaagaaaaac |
39512440 |
T |
|
| Q |
216 |
tacatacatggtcaccctttg |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39512439 |
tacatacatggtcaccctttg |
39512419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University