View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_16 (Length: 244)
Name: NF1455_low_16
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_16 |
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| [»] scaffold0991 (1 HSPs) |
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Alignment Details
Target: scaffold0991 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0991
Description:
Target: scaffold0991; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 2551 - 2397
Alignment:
| Q |
1 |
ttcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatggccaaggagttgcatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2551 |
ttcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatggccaaggagttgcatttca |
2452 |
T |
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| Q |
101 |
acaaagatggttccgctatcaagaaacttcaggtgggttattcacaatcatgctc |
155 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2451 |
acaaagatggttccgctatcaagaaactccaggtgggttattcacaatcatgctc |
2397 |
T |
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Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 4833542 - 4833696
Alignment:
| Q |
1 |
ttcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatggccaaggagttgcatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4833542 |
ttcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatggccaaggagttgcatttca |
4833641 |
T |
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| Q |
101 |
acaaagatggttccgctatcaagaaacttcaggtgggttattcacaatcatgctc |
155 |
Q |
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| T |
4833642 |
acaaagatggttccgctatcaagaaactccaggtgggttattcacaatcatgctc |
4833696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 4821743 - 4821897
Alignment:
| Q |
1 |
ttcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatggccaaggagttgcatttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
4821743 |
ttcccatcttcttcccgcagaaaaactaccagcaacgtcgctctaaccaggaagaatcggaaccctaaagtctcagccatggccaaggagttgtatttta |
4821842 |
T |
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| Q |
101 |
acaaagatggttccgctatcaagaaacttcaggtgggttattcacaatcatgctc |
155 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
4821843 |
acaaagatggttccgctatcaagaaactccaagtgggttattcacaatcatgctc |
4821897 |
T |
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