View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_18 (Length: 241)
Name: NF1455_low_18
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_18 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 52732308 - 52732398
Alignment:
| Q |
151 |
actaggatatatagacactcttgttaataaataaattgatctattgtctaataaatttaactcgaaatttgattttaaaatttagaatttt |
241 |
Q |
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| T |
52732308 |
actaggatatataaacactcttgttaataaataaattgatctattgtctaataaatttaactcgaaatttgattttaaaatttagaatttt |
52732398 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 52732130 - 52732181
Alignment:
| Q |
18 |
attgagaagatccaattcaataataacttaaagcatttgaatataaatatgt |
69 |
Q |
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| T |
52732130 |
attgagaagatccaattcaataataacttaaagcatttgaatataaatatgt |
52732181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 52732196 - 52732246
Alignment:
| Q |
51 |
catttgaatataaatatgtgaaaggtgtaacataactcaaatgacaataac |
101 |
Q |
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| T |
52732196 |
catttgaatataaatatgtgaaaggtgtaacataactcaaatgacaataac |
52732246 |
T |
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