View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_19 (Length: 237)
Name: NF1455_low_19
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 49520488 - 49520695
Alignment:
| Q |
14 |
tgcacaattcgatgctcaaaaatgtaaattatgccaaatatatattataggattatttggcatcttacctatcatcatcttggaatgaacatagatcatg |
113 |
Q |
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| T |
49520488 |
tgcacaattcgatgctcaaaaatgtaaattatgccaaatatatattataggattatttagcatcttacctatcatcatcttggaatgaacatagatcatg |
49520587 |
T |
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| Q |
114 |
aatcttctagacttttgtgctctatgataatcactgtcaggcgctggttcctctggaggagtgtactctccatctttcttactctcccttttaccaagac |
213 |
Q |
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| T |
49520588 |
aatcttctagacttttgtgctctatgataatcactgtcaggcgctggttcctctggaggagtgtactctccatctttcttactctcccttttaccaagac |
49520687 |
T |
|
| Q |
214 |
aataaaat |
221 |
Q |
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|||||||| |
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| T |
49520688 |
aataaaat |
49520695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 49509405 - 49509482
Alignment:
| Q |
77 |
cttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcagg |
154 |
Q |
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| T |
49509405 |
cttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctctactataatcactgtcagg |
49509482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 44663162 - 44663124
Alignment:
| Q |
77 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
115 |
Q |
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| T |
44663162 |
cttacctatcatcatcttggcatgaacatagatcatgaa |
44663124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 2415896 - 2415934
Alignment:
| Q |
77 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
115 |
Q |
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|||||||||||||||||||| ||||||||| |||||||| |
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| T |
2415896 |
cttacctatcatcatcttggtatgaacatatatcatgaa |
2415934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 5401783 - 5401739
Alignment:
| Q |
78 |
ttacctatcatcatcttggaatgaacatagatcatgaatcttcta |
122 |
Q |
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||||||||||| | ||||||||||||||| | ||||||||||||| |
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| T |
5401783 |
ttacctatcatgagcttggaatgaacataaaccatgaatcttcta |
5401739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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