View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_2 (Length: 448)
Name: NF1455_low_2
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 51912191 - 51911771
Alignment:
| Q |
11 |
cagagacaagaaggattaaaacatgactttgtacaacagcaacatggatttacctttggacaagttgggcaagagcaagtgcaggtgcatttgcaactgc |
110 |
Q |
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| T |
51912191 |
cagaaacaagaaggattaaaacatgactttgtacaacagcaacatggatttacctttggacaagttgggcaagagcaagtgcaggtgcatttgcaactgc |
51912092 |
T |
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| Q |
111 |
ataaagaagggcatgatggacacccaaaattgcaactagttggaaaagtacaacaatttcccgaaccaaggctttgtttacagcaatttgatttgggaca |
210 |
Q |
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| T |
51912091 |
ataaagaagggcatgatggacacccaaaattgcaactagttggaaaagtacaacaatttcccgaaccaaggctttgtttacagcaatttgatttgggaca |
51911992 |
T |
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| Q |
211 |
agagaaacaacagcaacagttccacttaggtaaggaacaagtgaaggatggaaaacagttgctgcaactgcaacaactgcatggtttacagtcactgcag |
310 |
Q |
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| T |
51911991 |
agagaaacaacagcaacagttccacttaggtaaggaacaagtgaaggatggaaaacagttgctgcaactgcaacaactgcatggtttacagtcactgcag |
51911892 |
T |
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| Q |
311 |
cagcttggtaattttagatgtacagataatccatcacagcagcagcagcaacagcagatccaagacagattaaaacatggcaaacgactgcacataaaag |
410 |
Q |
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| T |
51911891 |
cagcttggtaattttagatgtacagataatccatcacagcagcagcagcagcagcagatccaagacagattaaaacatggcaaacgactgcacataaaag |
51911792 |
T |
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| Q |
411 |
ttagttactcatgttattcgt |
431 |
Q |
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| T |
51911791 |
ttagttactcatgttattcgt |
51911771 |
T |
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