View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_24 (Length: 223)
Name: NF1455_low_24
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 39409750 - 39409937
Alignment:
| Q |
20 |
gcaaggctccatttgaatgaatgattttgttttaaacttgttcttattattgttaaaagacaagtttttatcatttgcaaggctcaatttgaatgatttt |
119 |
Q |
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| T |
39409750 |
gcaaggctccatttgaatgaatgattttgttttaaacttgttcttattattgttaaaagacaagtttttatcatttgcaaggctcaatttgaatgatttt |
39409849 |
T |
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| Q |
120 |
gctttaagtttgaatgtaatatgcagaaaatcatttttgtgtaaaatttctttttcaacttctatttgttccttatgatctctatatt |
207 |
Q |
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| T |
39409850 |
gctttaagtttgaatgtaatatgcagaaaatcatttttgtgtaaaatttctttttcaacttctatttgttccttatgatctctatatt |
39409937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 39408048 - 39408165
Alignment:
| Q |
37 |
tgaatgattttgttttaaacttgttcttattattgttaaaagacaagtttttatcatttgcaaggctcaatttgaatgattttgctttaagtttgaatgt |
136 |
Q |
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| T |
39408048 |
tgaatgattttgttttaaacttgttcttattattgttaaaagacaagtttttatcatttgcaaggctcaatttgaatgattttgctgtaagtttgaattt |
39408147 |
T |
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| Q |
137 |
aatatgcagaaaatcatt |
154 |
Q |
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| T |
39408148 |
aatatgcagaaaatcatt |
39408165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 39407994 - 39408065
Alignment:
| Q |
55 |
acttgttcttattattgttaaaagacaagtttttatcatttgcaaggctcaatttgaatgattttgctttaa |
126 |
Q |
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| T |
39407994 |
acttgttcttattattgttaaaagacaagtttttattatttgcaaggctccatttgaatgattttgttttaa |
39408065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 39409709 - 39409769
Alignment:
| Q |
55 |
acttgttcttattattgttaaaagacaagtttttatcatttgcaaggctcaatttgaatga |
115 |
Q |
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| T |
39409709 |
acttgttcttattattgttaaaagacaagtttttattatttgcaaggctccatttgaatga |
39409769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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