View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_3 (Length: 446)
Name: NF1455_low_3
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 129 - 426
Target Start/End: Complemental strand, 29653545 - 29653250
Alignment:
| Q |
129 |
tagcttcaaagtcactccaagataataaccttacacctccaccactcagaatcaaacaaagacattatatatttcattatttaaaaacatcttaaggtaa |
228 |
Q |
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| T |
29653545 |
tagcttcaaagtctctccaagaaaataaccttacacctcaaccactcggaatcaaacaaagacattatat--ttcattatttaaaaacatctcaagataa |
29653448 |
T |
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| Q |
229 |
acatcatcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccatcaaattttcactaagat |
328 |
Q |
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| T |
29653447 |
acaccatcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccctcaaattttcactaagat |
29653348 |
T |
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| Q |
329 |
aaacattacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatccaacttcgctacggtcatagtctttcatataa |
426 |
Q |
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| T |
29653347 |
aaacattacctcccgtgatatcaagagattcaagaagcggacatcgatcaagaatcgcaagccatccaacttcgctacggtcatagtctttcatataa |
29653250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 196 - 426
Target Start/End: Complemental strand, 29681825 - 29681594
Alignment:
| Q |
196 |
tatatttcattatttaaaaacatcttaaggtaaacatcatcatcataatagtgttcttcaatgtgagc-ccaaactggcagatgcaaaattttgatctgc |
294 |
Q |
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| T |
29681825 |
tatatttcatcatttaaatacatctcaagataaatatgatcatcataatagtgttcttcaatacgagggcctaactgacagccgcaaatttttgatcttc |
29681726 |
T |
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| Q |
295 |
tcacgacacctttccatcaaattttcactaagataaacattacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatc |
394 |
Q |
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| T |
29681725 |
tcatgacacctttccttcaaattttcattaaaataaacattgcctccccgaatgtcaagagattcaagaagcagacatcgatcaagaatcgcaagccatc |
29681626 |
T |
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| Q |
395 |
caacttcgctacggtcatagtctttcatataa |
426 |
Q |
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| T |
29681625 |
caacttcgctgcggtcatagtctttcatataa |
29681594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29653673 - 29653611
Alignment:
| Q |
1 |
aaaggaagaaaaatcaacgcaattagaaaaaacataacagtccatccgattactcaagcatgc |
63 |
Q |
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| T |
29653673 |
aaaggaagaaaaatcaacgcaattagaaaagacataacagtccatccaattactcaagcatgc |
29653611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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