View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_4 (Length: 415)
Name: NF1455_low_4
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 54217813 - 54218217
Alignment:
| Q |
1 |
ataatctaagttgaagttgaattatgcagggtgggtgctcaatttgtttgcagctatatcacacttcctctctatgcactcgtcacacaggtacatttca |
100 |
Q |
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| T |
54217813 |
ataatctaagttgaagttgaattatgcagggtgggtgctcaatttgtttgcagctatatcacacttcctctctatgcactcgtcacacaggtacatttca |
54217912 |
T |
|
| Q |
101 |
tttttaaggtcatgttaacaagtacccttataatacttgttaagcaagcaaagtatagaaactttgtattaaaaaatgaaatgaattgatgaaggagaat |
200 |
Q |
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| T |
54217913 |
tttttaaggtcatgttaacaagtacccttatgatacttgttaagcaagcaaagtatagaaactttgtattgaaaaatgaaatgaattgatgaaggagaat |
54218012 |
T |
|
| Q |
201 |
attaatcttgttgttatgatttaaaaatatcagatgggatcaacgatgaagcggtcaatatttgacgagcaaacatcaaaggcattgcaaaactggcgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218013 |
attaatcttgttgttatgatttaaaaatatcagatgggatcaacgatgaagcggtcaatatttgacgagcaaacatcaaaggcattgcaaaactggcgta |
54218112 |
T |
|
| Q |
301 |
aaaatgcaatgcataagaaaccatcaaaaggacgctcgaaggaaactcgaaaattaggaggaggagaagcggggtcacctgtgcattcgccgttacatga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218113 |
aaaatgcaatgcataagaaaccatcaaaaggacgctcgaaggaaactcgaacattaggaggaggagaagcggggtcacctgtgcattcgccgttacatga |
54218212 |
T |
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| Q |
401 |
tgatg |
405 |
Q |
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||||| |
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| T |
54218213 |
tgatg |
54218217 |
T |
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