View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_5 (Length: 392)
Name: NF1455_low_5
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 91 - 377
Target Start/End: Complemental strand, 37654054 - 37653750
Alignment:
| Q |
91 |
cctgaaactttcttttcaataacaaaaaataattataatctatgctttatattgaatttatatacagggcaatattattgtcgccatttatacttggact |
190 |
Q |
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| T |
37654054 |
cctgaaactttcttttcaataacaaaaaataattataatctatgctctatattgaatttatatacagggcaatattattgtcgccatttatacttggact |
37653955 |
T |
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| Q |
191 |
gacttttgcataatatattccgatggagtccaattcaaactccattaatccagtttcaaggttagtacctcggtttgctactatgcattag--------- |
281 |
Q |
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| T |
37653954 |
gacttttgcataatatattccgatggagtccaattcaaactccattaatccagtttcaaggttagtacctcggtttgctactatgcattagcatttaact |
37653855 |
T |
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| Q |
282 |
---------caaagttcaaacaagttactaactagtgtttaaagacttggccaacatcttatataaactgtttaccattttggctgccttaggtagtact |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
37653854 |
tttatctttcaaagttcaaacaagttactaactagtgtttaaagacttggcaaacatcttatataaactgtttaccattttgactgccttagctagtact |
37653755 |
T |
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| Q |
373 |
gaact |
377 |
Q |
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||||| |
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| T |
37653754 |
gaact |
37653750 |
T |
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