View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1455_low_7 (Length: 374)

Name: NF1455_low_7
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1455_low_7
NF1455_low_7
[»] chr4 (9 HSPs)
chr4 (1-357)||(24083044-24083400)
chr4 (122-247)||(45195754-45195878)
chr4 (139-240)||(26988961-26989061)
chr4 (122-207)||(39791230-39791314)
chr4 (78-239)||(33086857-33087014)
chr4 (155-242)||(7257320-7257407)
chr4 (117-203)||(782368-782453)
chr4 (141-225)||(12311813-12311897)
chr4 (140-240)||(53689001-53689101)
[»] chr1 (7 HSPs)
chr1 (117-250)||(32556489-32556621)
chr1 (139-240)||(48400912-48401009)
chr1 (155-238)||(31577999-31578081)
chr1 (124-227)||(23404886-23404988)
chr1 (136-205)||(31767921-31767989)
chr1 (151-240)||(38091245-38091334)
chr1 (152-240)||(17339752-17339839)
[»] chr3 (9 HSPs)
chr3 (120-248)||(26665471-26665599)
chr3 (122-219)||(26988677-26988773)
chr3 (139-239)||(51715008-51715107)
chr3 (117-184)||(15462075-15462141)
chr3 (121-239)||(30670839-30670957)
chr3 (122-219)||(44053379-44053475)
chr3 (170-240)||(7925339-7925409)
chr3 (122-176)||(42110963-42111017)
chr3 (117-242)||(43726562-43726686)
[»] chr8 (9 HSPs)
chr8 (141-227)||(40506623-40506709)
chr8 (96-224)||(13818755-13818882)
chr8 (122-240)||(40899623-40899739)
chr8 (140-238)||(37507535-37507632)
chr8 (139-240)||(27157688-27157788)
chr8 (150-223)||(31078809-31078881)
chr8 (143-239)||(9748309-9748404)
chr8 (122-192)||(37325127-37325196)
chr8 (179-239)||(29026240-29026300)
[»] chr6 (17 HSPs)
chr6 (140-240)||(33450800-33450900)
chr6 (155-242)||(7591051-7591138)
chr6 (135-240)||(989483-989587)
chr6 (155-240)||(6542019-6542104)
chr6 (135-242)||(33240866-33240971)
chr6 (133-239)||(6978492-6978598)
chr6 (117-227)||(9929304-9929413)
chr6 (164-242)||(26894192-26894270)
chr6 (155-240)||(32826713-32826798)
chr6 (151-203)||(2119260-2119312)
chr6 (117-217)||(29389154-29389254)
chr6 (116-227)||(3049739-3049850)
chr6 (141-203)||(10242545-10242606)
chr6 (140-238)||(29263827-29263925)
chr6 (163-224)||(20207200-20207261)
chr6 (163-224)||(22101223-22101284)
chr6 (136-240)||(30522090-30522193)
[»] chr7 (10 HSPs)
chr7 (147-248)||(35356393-35356493)
chr7 (135-225)||(44453609-44453698)
chr7 (122-241)||(17115878-17115997)
chr7 (117-223)||(16377880-16377985)
chr7 (117-215)||(39560009-39560106)
chr7 (122-224)||(48392399-48392500)
chr7 (176-240)||(2391580-2391644)
chr7 (122-205)||(17298394-17298477)
chr7 (117-239)||(3255120-3255242)
chr7 (139-205)||(22713435-22713501)
[»] chr2 (11 HSPs)
chr2 (117-238)||(24510893-24511013)
chr2 (139-240)||(34190767-34190867)
chr2 (155-240)||(37267708-37267793)
chr2 (129-196)||(34810326-34810393)
chr2 (123-197)||(23046581-23046654)
chr2 (173-240)||(35453191-35453258)
chr2 (117-240)||(43050109-43050231)
chr2 (122-239)||(13019646-13019763)
chr2 (117-166)||(22417303-22417352)
chr2 (141-197)||(4377180-4377235)
chr2 (187-235)||(25314699-25314747)
[»] chr5 (11 HSPs)
chr5 (134-205)||(40491706-40491777)
chr5 (140-242)||(8217100-8217200)
chr5 (176-240)||(37928069-37928133)
chr5 (117-196)||(22023744-22023823)
chr5 (141-223)||(27707205-27707287)
chr5 (170-242)||(32177312-32177384)
chr5 (139-238)||(33043864-33043962)
chr5 (168-242)||(35631228-35631302)
chr5 (142-207)||(39965302-39965367)
chr5 (120-240)||(17223063-17223183)
chr5 (168-240)||(27549740-27549812)
[»] scaffold0071 (1 HSPs)
scaffold0071 (117-184)||(51-117)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 24083400 - 24083044
Alignment:
Q  1 aaaggaattttctaaggtttgtaggggattgtgcttgcaattttttggttggtctagcagcccttatgcgactcctccttttcccaccttattgatttcc 100  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24083400 aaaggatttttctaaggtttgtaggggattgtgcttgcagttttttggttggtctagcagcccttatgcgattcctccttttcccaccttattgatttcc 24083301  T
Q  101 cgcgagttctatttctttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaa 200  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  24083300 cgcgagttctatttttttcggattatataatccaaactgcataaacaccccataaaaatctcttaacacacgttaaaatatttcggattttagaatccaa 24083201  T
Q  201 ataggacatgcgagaaactcataggataggaaaagtaatgacattattatggcgtttataaacttcgatgtaatgagtcaagggtatccaatatactcat 300  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24083200 atagggcacgcgagaaactcacaggataggaaaagtaatgacattattatgacgtttataaacttcgatgtaatgagtcaagggtatccaatatactcat 24083101  T
Q  301 tttaatccatctttacttataaaataaggtatattagtattgcttgctgtacaatgt 357  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24083100 tttaatccatttttacttataaaataaggtatattagtattgcttgctgtacaatgt 24083044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 45195754 - 45195878
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactca 221  Q
    |||||||||||| |||  |||||||| |  ||||||||||||||| | ||||||||| ||||||||||||||||| |||||| | | |||||||||||||    
T  45195754 attatataattcgaacgacataaacatcttataaaaatctccaaa-atacgttaaaacatttcgaattttagaattcaaataaggcgtgcgagaaactca 45195852  T
Q  222 taggataggaaaagtaatgacattat 247  Q
    |||||||| |||| ||||||||||||    
T  45195853 taggatagaaaaaataatgacattat 45195878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 26988961 - 26989061
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    ||||| |||||||||||||| || |||| ||||||||||| |||||| ||||||||||| | ||||| || || ||||||||||||| | ||||||||||    
T  26988961 gcatatacaccccataaaaaccttcaaa-acacgttaaaacatttcggattttagaatctagatagggcacgcaagaaactcatagggtgggaaaagtaa 26989059  T
Q  239 tg 240  Q
    ||    
T  26989060 tg 26989061  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 39791314 - 39791230
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggac 207  Q
    |||||| ||| | ||| ||||||||||||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||||||||    
T  39791314 attatagaatccgaacggcataaacaccccataaaaatcttcaaa-acacgttgaaatatttcggattttagaattcaaataggac 39791230  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 33087014 - 33086857
Alignment:
Q  78 cttttcccaccttattgatttcccgcgagttctatttctttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaa 177  Q
    ||||| |||||||||| ||||| |||    |||||||  |||| |||||||||||| ||   || |||||||||||||||  ||| ||| ||||||||||    
T  33087014 ctttttccaccttatttatttctcgcattctctattttgttcggattatataattcgaatgacaaaaacaccccataaaaggctctaaa-acacgttaaa 33086916  T
Q  178 atatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaat 239  Q
    | ||||||||||||| ||||| |||| |    |||||||||||||||||   ||||||||||    
T  33086915 acatttcgaattttaaaatccgaatatg---cgcgagaaactcataggaggagaaaagtaat 33086857  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 7257320 - 7257407
Alignment:
Q  155 aaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatgac 242  Q
    |||| ||||||| ||| ||| |||||| | | |||||||||| | |||||| |||||||||| |||||||| | | ||||||||||||    
T  7257320 aaaacctccaaaaacatgttgaaatatcttggattttagaatacgaatagggcatgcgagaacctcatagggtggaaaaagtaatgac 7257407  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 782368 - 782453
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaata 203  Q
    |||||||| || ||| | ||||||||||| ||| ||||||| |||||||| | | ||| |||||||||| |||||||||||| ||||    
T  782368 ttcgaattttagaatccgaactgcataaaaacctcataaaa-tctccaaaaaaaagttgaaatatttcggattttagaatccgaata 782453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 12311897 - 12311813
Alignment:
Q  141 ataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcatagg 225  Q
    ||||||||| |||||||||||| ||| | | ||||||||| |||  || ||| |||| ||||| |||  ||||||||||||||||    
T  12311897 ataaacacctcataaaaatctctaaaaatatgttaaaataattcagatgttaaaatctaaataagacgcgcgagaaactcatagg 12311813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 53689101 - 53689001
Alignment:
Q  140 cataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaat 239  Q
    |||||||||||||||||||  | |||| | ||||| ||| ||||  || |||||| ||| |||||  |||||||||||||| |||| | | |||||||||    
T  53689101 cataaacaccccataaaaaatttcaaaaatacgttgaaacattttaaaatttagattccgaatagagcatgcgagaaactcctagggtggtaaaagtaat 53689002  T
Q  240 g 240  Q
    |    
T  53689001 g 53689001  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 32556489 - 32556621
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| |||||||||| ||||| | ||||  ||| |||||||| ||||||| | |||||| ||||||||  |||||| ||||| |||||||| ||||||||    
T  32556489 ttcggattatataatccaaacggtataattacctcataaaaacctccaaa-atacgttacaatatttcagattttaaaatccgaataggacgtgcgagaa 32556587  T
Q  217 actcataggataggaaaagtaatgacattattat 250  Q
    ||||||||||||  ||||||||||||| ||||||    
T  32556588 actcataggataaaaaaagtaatgacaatattat 32556621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 48401009 - 48400912
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    |||||||||||| ||||||| ||||||| ||||||||||| |||||| |||||||||||| |||||||||  ||| ||||||||| ||| ||||||||||    
T  48401009 gcataaacaccctataaaaacctccaaa-acacgttaaaacatttcggattttagaatccgaataggaca--cgataaactcata-gatgggaaaagtaa 48400914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 31577999 - 31578081
Alignment:
Q  155 aaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    |||| ||||||| ||||||| |||||||||| ||||||||||||||||||| |  ||||||| |||||||| | ||||||||||    
T  31577999 aaaacctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcatagg-tgggaaaagtaa 31578081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 23404988 - 23404886
Alignment:
Q  124 tatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcata 223  Q
    |||| ||||||||| ||||||| ||||||||||  | |||||| ||| ||| |||  ||||| |||||| ||| | |||| ||| |||||||||||||||    
T  23404988 tatagaattcaaacggcataaaaaccccataaatct-tccaaaaacatgttgaaacgtttcggattttaaaattcgaatatgacgtgcgagaaactcata 23404890  T
Q  224 ggat 227  Q
    ||||    
T  23404889 ggat 23404886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 31767921 - 31767989
Alignment:
Q  136 actgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaatagg 205  Q
    |||||||||| ||| ||||||| | || ||| ||||||| |||||||||| |||||| ||||||||||||    
T  31767921 actgcataaaaacctcataaaactttcaaaa-acacgttgaaatatttcggattttaaaatccaaatagg 31767989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 38091245 - 38091334
Alignment:
Q  151 cataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    |||||||| || |||  ||||| | ||||||||||||||||||||||  ||||||||  |||||||  ||| |||||  |||||||||||    
T  38091245 cataaaaaccttcaataacacggtgaaatatttcgaattttagaatctgaataggacgcgcgagaacgtcacaggatgtgaaaagtaatg 38091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 17339752 - 17339839
Alignment:
Q  152 ataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    ||||||| ||||||| |||| || |||||||||  |||||||||||  |||||| |||  |||||||| ||||||| | ||||||||||    
T  17339752 ataaaaacctccaaa-acacatttaaatatttcagattttagaatctgaatagggcatatgagaaactgataggatggaaaaagtaatg 17339839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 26665471 - 26665599
Alignment:
Q  120 gaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaact 219  Q
    |||||||| ||| | ||| ||||||||| ||||||||||| ||  || ||| ||| |||||||||| |||||| ||||||||||||||  ||||||||||    
T  26665471 gaattatagaatccgaacggcataaacaacccataaaaatttcggaaaacatgttgaaatatttcggattttaaaatccaaataggacgcgcgagaaact 26665570  T
Q  220 cataggataggaaaagtaatgacattatt 248  Q
    |||||||| |||||| ||| ||| |||||    
T  26665571 cataggatgggaaaaataacgaccttatt 26665599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 26988677 - 26988773
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaact 219  Q
    |||||| |||| |||| |||||||||| |||||||| |||| ||| | || |||||| |||| |||||||||||||||||||| || |||||||||||    
T  26988677 attatagaatttaaacggcataaacactccataaaattctcaaaa-atacattaaaaaattttgaattttagaatccaaatagtacgtgcgagaaact 26988773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 51715107 - 51715008
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    |||||||||||||||||||| ||||||| ||||||||||| |||||  |||||||||||| ||| || |  ||||||||||| || |||  |||||||||    
T  51715107 gcataaacaccccataaaaacctccaaa-acacgttaaaacatttcagattttagaatccgaatcgggcgcgcgagaaactcgtatgatgagaaaagtaa 51715009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 15462141 - 15462075
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttc 184  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  15462141 ttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaa-acacgtttaaatatttc 15462075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 30670839 - 30670957
Alignment:
Q  121 aattatataattcaaactgcataaacacccc-ataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaact 219  Q
    ||||||| ||||| ||| ||||||||||||| |||||||| | |||| |||| |||||| |||||  |||||||||||| |||| ||   ||||||||||    
T  30670839 aattatagaattcgaacagcataaacacccctataaaaattttcaaa-acacattaaaacatttcagattttagaatccgaataagatgcgcgagaaact 30670937  T
Q  220 cataggataggaaaagtaat 239  Q
    ||||| ||  ||||||||||    
T  30670938 catagtatgagaaaagtaat 30670957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 44053475 - 44053379
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaact 219  Q
    |||||||||  | ||| ||||||| | |||||||||| |||||||  ||||||||||||||| | |||||| ||||| | |||||| |||||||||||    
T  44053475 attatataacccgaacggcataaatatcccataaaaacctccaaag-cacgttaaaatattttggattttataatccgattaggacgtgcgagaaact 44053379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 7925409 - 7925339
Alignment:
Q  170 acgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    ||||| |||||||||  ||||||||||| |||||||||| | |||||| ||||||| | | ||||||||||    
T  7925409 acgttgaaatatttcagattttagaatctaaataggacacgtgagaaattcatagggtggaaaaagtaatg 7925339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 42110963 - 42111017
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaa 176  Q
    |||||| ||||| |||  ||||||||||||||||||| ||||||| |||||||||    
T  42110963 attatagaattcgaacgacataaacaccccataaaaacctccaaaaacacgttaa 42111017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 43726686 - 43726562
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| |||||||||||| ||||  ||||||||| ||| |||| ||| ||| ||| | |||||||||||  |||||| ||| | |||||| |  |||||||    
T  43726686 ttcggattatataattcgaactatataaacacctcatcaaaacctctaaa-acatgataaaatatttctgattttaaaattctaatagggcgcgcgagaa 43726588  T
Q  217 actcataggataggaaaagtaatgac 242  Q
    ||||||| | | | ||||||||||||    
T  43726587 actcataaggtggaaaaagtaatgac 43726562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 40506709 - 40506623
Alignment:
Q  141 ataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggat 227  Q
    |||||||| ||||||||| |||||||  |||||| |||||||||| |||||| |||||||||||| ||| |||||||||||||||||    
T  40506709 ataaacactccataaaaacctccaaaatcacgttgaaatatttcggattttacaatccaaatagggcatacgagaaactcataggat 40506623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 13818882 - 13818755
Alignment:
Q  96 tttcccgcgagttctatttctttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaa 195  Q
    |||| |||| ||||||| |  |||| |||||| ||| |||||| ||||||||||||||| ||| | ||||| ||||||| |||||||| |||||||| ||    
T  13818882 tttctcgcgcgttctatgtagttcggattatagaatccaaacttcataaacaccccatataaaccaccaaa-acacgttgaaatattttgaattttaaaa 13818784  T
Q  196 tccaaataggacatgcgagaaactcatag 224  Q
    |||||||||  | ||| ||||||||||||    
T  13818783 tccaaatagatcgtgcaagaaactcatag 13818755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 40899739 - 40899623
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactca 221  Q
    |||||| ||||| ||  |||||||||||||||||||| || |||| |||||||||||||||||  |||||| ||||  |||||| |  |||| |||||||    
T  40899739 attataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagggc--gcgaaaaactca 40899642  T
Q  222 taggataggaaaagtaatg 240  Q
    | | |||||||||||||||    
T  40899641 ttgaataggaaaagtaatg 40899623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 37507632 - 37507535
Alignment:
Q  140 cataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    |||||| |||||||||||| ||||||| ||||||| ||| |||||| |||||||||| | |||||| |  || ||||||||||||| | ||||||||||    
T  37507632 cataaataccccataaaaacctccaaa-acacgttgaaacatttcggattttagaattcgaatagggcgcgcaagaaactcatagggtgggaaaagtaa 37507535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 27157688 - 27157788
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    ||||||| ||||||||||| ||||||||  |||||| ||||| |||| |||||||||||| ||||| ||   ||||||||||||||| | | ||||||||    
T  27157688 gcataaataccccataaaa-tctccaaaaccacgttgaaataattcggattttagaatccgaatagcacgcacgagaaactcatagggtggaaaaagtaa 27157786  T
Q  239 tg 240  Q
    ||    
T  27157787 tg 27157788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 31078809 - 31078881
Alignment:
Q  150 ccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcata 223  Q
    |||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||   ||||||||||||||    
T  31078809 ccataaaaatttccaaa-acacgttaaaacatttcaaattttagagaccaaataggatgcgcgagaaactcata 31078881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 9748309 - 9748404
Alignment:
Q  143 aaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaat 239  Q
    |||||| ||||||||||||| ||| |||||||||| | ||| | |||||||||||| |||||| || | ||||| |||||||| | | |||||||||    
T  9748309 aaacactccataaaaatctcaaaa-acacgttaaatttttttggattttagaatccgaatagggcacgggagaagctcatagggtggaaaaagtaat 9748404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 37325196 - 37325127
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaatttta 192  Q
    |||||| ||||||||   |||||||| ||||| |||| ||||||| ||||||||||| |||||||||||||    
T  37325196 attatagaattcaaatgacataaacatcccattaaaacctccaaa-acacgttaaaacatttcgaatttta 37325127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 29026240 - 29026300
Alignment:
Q  179 tatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaat 239  Q
    |||||| |||||||||||   ||||||| | |||||||||||||||||||| |||| ||||    
T  29026240 tatttcaaattttagaatttgaataggatacgcgagaaactcataggatagaaaaaataat 29026300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 33450900 - 33450800
Alignment:
Q  140 cataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaat 239  Q
    |||||||||| | |||||  ||||||| ||||||| ||||||||||||||||||||||| ||||||||  || |||| ||||||||||| ||||| ||||    
T  33450900 cataaacacctcctaaaagcctccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgcgcaagaagctcataggataagaaaattaat 33450801  T
Q  240 g 240  Q
    |    
T  33450800 g 33450800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 7591138 - 7591051
Alignment:
Q  155 aaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatgac 242  Q
    |||| ||| ||| ||||||| |||||||||| |||||||||||  ||||||||  ||| |||| ||||||||| ||||||||||||||    
T  7591138 aaaacctcaaaaaacacgttgaaatatttcggattttagaatcttaataggacgcgcgggaaattcataggatgggaaaagtaatgac 7591051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 989587 - 989483
Alignment:
Q  135 aactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaa 234  Q
    |||||||||||  |||||||||| |||||||| ||||||| |||||||||  |||||||| ||  |||||| | |||||||| |||||  ||||| ||||    
T  989587 aactgcataaaacccccataaaa-tctccaaaaacacgttgaaatatttcagattttagattctgaatagggcgtgcgagaagctcatgagatagaaaaa 989489  T
Q  235 gtaatg 240  Q
    ||||||    
T  989488 gtaatg 989483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 6542019 - 6542104
Alignment:
Q  155 aaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    ||||||| ||||  ||||||||||||||| |||||||||||||  |||||||||  ||||||||||||| | | | ||||||||||    
T  6542019 aaaatcttcaaaagcacgttaaaatattttgaattttagaatctgaataggacacacgagaaactcatacggttgaaaaagtaatg 6542104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 33240866 - 33240971
Alignment:
Q  135 aactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaa 234  Q
    ||||| ||||| |||||||||||| || |||| ||  ||| |||||||||| |||||||||||| |||||| |   ||||||||||||||||||  ||||    
T  33240866 aactgtataaataccccataaaaaccttcaaaaac--gttgaaatatttcggattttagaatccgaatagggcgcacgagaaactcataggatataaaaa 33240963  T
Q  235 gtaatgac 242  Q
     |||||||    
T  33240964 ataatgac 33240971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 6978492 - 6978598
Alignment:
Q  133 caaactgcataaacaccccataaaaatctccaaacac-acgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggatagga 231  Q
    ||||||||||||| || ||||||||  ||||||| |  ||||| ||||||||   |||||||||||||||||||||   ||||||||||||||||| | |    
T  6978492 caaactgcataaaaactccataaaac-ctccaaaaattacgttgaaatattttagattttagaatccaaataggacgcacgagaaactcataggatggaa 6978590  T
Q  232 aaagtaat 239  Q
    ||||||||    
T  6978591 aaagtaat 6978598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 9929413 - 9929304
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| |||||| ||||| |||  |||||||||| |||||||| ||||||| ||||||| ||| |||||  |||||| |||| ||||||||  ||||| |     
T  9929413 ttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaa-acacgttgaaagatttcagattttaaaatctaaataggaggtgcgacat 9929315  T
Q  217 actcataggat 227  Q
    |||||||||||    
T  9929314 actcataggat 9929304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 26894192 - 26894270
Alignment:
Q  164 aaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatgac 242  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||   |||||||| || | |||| |||| ||||||||    
T  26894192 aaacacacgttcaaatattttgaattttagaaaccaaataggacgcacgagaaacccacaagataagaaatgtaatgac 26894270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 32826713 - 32826798
Alignment:
Q  155 aaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    |||| ||||||| || |||| ||||||||  ||||||||||| ||||||| ||  ||||||||||||||| || | ||||||||||    
T  32826713 aaaacctccaaaaactcgttgaaatatttaaaattttagaattcaaatagaacgcgcgagaaactcatagaatggaaaaagtaatg 32826798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 2119260 - 2119312
Alignment:
Q  151 cataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaata 203  Q
    ||||||||||| |||| |||||||||||||||||| ||| |||||||| ||||    
T  2119260 cataaaaatcttcaaaaacacgttaaaatatttcggattgtagaatccgaata 2119312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 29389154 - 29389254
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| |||||| ||| | ||| |||||||||||| ||||||| || |||| ||||||| ||| |||||| |||||| ||||  |||||| | ||||||||    
T  29389154 ttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttgaaacatttcggattttaaaatctgaatagggcgtgcgagaa 29389253  T
Q  217 a 217  Q
    |    
T  29389254 a 29389254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 3049850 - 3049739
Alignment:
Q  116 tttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgaga 215  Q
    |||||||||||| |||   ||| | ||||||| ||||||||||||  |||| ||||||||||| | || |||||||| |||   |||| ||| ||||| |    
T  3049850 tttcgaattatagaatcttaacggtataaacaacccataaaaatcatcaaaaacacgttaaaaaaatttgaattttaaaatttgaatatgacgtgcgaaa 3049751  T
Q  216 aactcataggat 227  Q
    ||||||||||||    
T  3049750 aactcataggat 3049739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 10242545 - 10242606
Alignment:
Q  141 ataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaata 203  Q
    |||||||| | ||||||||||||||| ||||||||||| |||||  ||||| |||||||||||    
T  10242545 ataaacacacaataaaaatctccaaa-acacgttaaaacatttcagattttggaatccaaata 10242606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 29263827 - 29263925
Alignment:
Q  140 cataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    ||||||||||| |||||||||| |||| |||| || ||| ||||   |||||| ||||  |||| ||| |||||||||||| ||| |||| ||||||||    
T  29263827 cataaacacccaataaaaatcttcaaaaacacattgaaacattttcgattttaaaatctgaataagacgtgcgagaaactcgtagaatagaaaaagtaa 29263925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 20207200 - 20207261
Alignment:
Q  163 caaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcatag 224  Q
    |||| ||||||| |||||||||  |||||||||||  |||||||||||||||| | ||||||    
T  20207200 caaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatag 20207261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 22101223 - 22101284
Alignment:
Q  163 caaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcatag 224  Q
    |||| ||||||| |||||||||  |||||||||||  |||||||||||||||| | ||||||    
T  22101223 caaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatag 22101284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 30522090 - 30522193
Alignment:
Q  136 actgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaag 235  Q
    |||||||||| ||| |||||||  ||||||| |||||| |||| |||||| ||||| |||||| |||||| ||  | |||| |||||| | | |||||||    
T  30522090 actgcataaaaacctcataaaac-ctccaaaaacacgtaaaaacatttcggattttggaatccgaatagggcacacaagaacctcataaggtgggaaaag 30522188  T
Q  236 taatg 240  Q
    |||||    
T  30522189 taatg 30522193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 35356393 - 35356493
Alignment:
Q  147 accccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatgacatta 246  Q
    |||||||||||| ||||||| ||||||||||| |||||| |||||||||| ||||||||||   ||||||||||| |||||  ||||||||| ||| |||    
T  35356393 accccataaaaacctccaaa-acacgttaaaacatttcggattttagaattcaaataggacgcacgagaaactcaaaggatgagaaaagtaacgacctta 35356491  T
Q  247 tt 248  Q
    ||    
T  35356492 tt 35356493  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 44453698 - 44453609
Alignment:
Q  135 aactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcatagg 225  Q
    ||||| ||||| || |||||||| | |||||| ||||||| ||||||||||||||||||||||| |||||||| | ||||||||| |||||    
T  44453698 aactgtataaagactccataaaact-tccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttatagg 44453609  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 17115997 - 17115878
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactca 221  Q
    |||||| ||||| |||  |||||||||||||||||||  | |||| ||||||| ||||||||   |||||| ||||||||||| ||  | |  |||||||    
T  17115997 attatagaattcgaacgacataaacaccccataaaaactttcaaaaacacgttgaaatattttagattttaaaatccaaatagaacgcgaggaaaactca 17115898  T
Q  222 taggataggaaaagtaatga 241  Q
    |||||||| |||||||||||    
T  17115897 taggatagaaaaagtaatga 17115878  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 16377880 - 16377985
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| ||||||||||| |||| ||||||||||| |||||||| || |||| |||||| |||||||||   |||||| |||| ||||| |||  |||||||    
T  16377880 ttcggattatataatttaaaccgcataaacacctcataaaaacct-caaaaacacgtaaaaatattttatattttaaaatctaaataagacgagcgagaa 16377978  T
Q  217 actcata 223  Q
    | |||||    
T  16377979 aatcata 16377985  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 39560009 - 39560106
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgaga 215  Q
    ||||||||||| ||||| |||| |||||||| |||||||||  || |||| ||||| | ||||||||||||||||| ||||  |||| ||| |||||||    
T  39560009 ttcgaattatagaattcgaact-cataaacatcccataaaatccttcaaaaacacggtgaaatatttcgaattttaaaatctgaatatgacgtgcgaga 39560106  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 48392500 - 48392399
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactca 221  Q
    |||||||||||| ||   ||||||||| | |||||| ||| |||| |||| |||||| |||||| |||||| |||||||||| ||||  |||||||||||    
T  48392500 attatataattcgaatgacataaacactctataaaagtcttcaaa-acaccttaaaagatttcggattttaaaatccaaatatgacacacgagaaactca 48392402  T
Q  222 tag 224  Q
    |||    
T  48392401 tag 48392399  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 2391644 - 2391580
Alignment:
Q  176 aaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    |||||||||| ||||||||||||||||||  |  ||||||||||||||||||   ||||||||||    
T  2391644 aaatatttcggattttagaatccaaatagtgcgcgcgagaaactcataggatgaaaaaagtaatg 2391580  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 17298477 - 17298394
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaatagg 205  Q
    |||||| ||| ||||| |||||||||||| ||| |||| | |||| |||| |||||| |||||| | ||||||||| |||||||    
T  17298477 attatagaatccaaacggcataaacaccctatagaaatgttcaaaaacactttaaaacatttcggaatttagaatctaaatagg 17298394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 3255120 - 3255242
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| ||||||||||   ||| |||||||||||||||||||| || |||| | |  || ||||||||   |||||||||||| |||||  |  |||||||    
T  3255120 ttcggattatataatcagaacggcataaacaccccataaaaaccttcaaaaatatattgaaatattttagattttagaatccgaatagagcgcgcgagaa 3255219  T
Q  217 actcataggataggaaaagtaat 239  Q
    ||||||||  ||| |||||||||    
T  3255220 actcatagagtagaaaaagtaat 3255242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 22713435 - 22713501
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaatagg 205  Q
    ||||||||||||  |||||| ||||||| ||||||| |||||||||  |||||| ||| ||||||||    
T  22713435 gcataaacaccctgtaaaaacctccaaaaacacgttgaaatatttcagattttaaaattcaaatagg 22713501  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 24511013 - 24510893
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    ||||||||||| ||||||||| ||||||||| |||||||||| ||||||| | ||||| |||||||||  |||||| ||||| ||||||   || || ||    
T  24511013 ttcgaattatagaattcaaacggcataaacatcccataaaaacctccaaa-atacgtttaaatatttcagattttaaaatccgaatagggtgtgtgaaaa 24510915  T
Q  217 actcataggataggaaaagtaa 238  Q
    ||||||||| | | ||||||||    
T  24510914 actcatagggtggaaaaagtaa 24510893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 34190867 - 34190767
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    ||||||||||| ||||||||||| | || |||| |||||| ||||| ||||||||||| | ||||||||||| |||| ||||||| | | | ||||||||    
T  34190867 gcataaacacctcataaaaatcttccaaaacacattaaaacatttc-aattttagaattcgaataggacatgggagatactcataaggtggaaaaagtaa 34190769  T
Q  239 tg 240  Q
    ||    
T  34190768 tg 34190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 37267793 - 37267708
Alignment:
Q  155 aaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    |||| |||| || |||||||||||||||||| ||||||||||||||||||| ||  |||||| |||||| | | | ||||||||||    
T  37267793 aaaacctcccaaaacacgttaaaatatttcggattttagaatccaaatagggcacacgagaagctcataaggtggaaaaagtaatg 37267708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 34810393 - 34810326
Alignment:
Q  129 aattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaat 196  Q
    ||||||||  ||||||||| ||||||||||||| |||| |||  || |||||||||||||||||||||    
T  34810393 aattcaaatggcataaacatcccataaaaatcttcaaaaacatattgaaatatttcgaattttagaat 34810326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 23046654 - 23046581
Alignment:
Q  123 ttatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatc 197  Q
    ||||||||| |||||  ||||||||||||||||||||||||||| || | |||||| ||||| ||||||| ||||    
T  23046654 ttatataatacaaacaacataaacaccccataaaaatctccaaa-acgcattaaaacatttcaaattttaaaatc 23046581  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 35453258 - 35453191
Alignment:
Q  173 ttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    |||||| ||||||||||||| |||  ||||||| ||  ||||||||||||||| ||| ||||||||||    
T  35453258 ttaaaacatttcgaattttataatttaaatagggcacacgagaaactcatagggtagaaaaagtaatg 35453191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 43050231 - 43050109
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaa 216  Q
    |||| |||||| ||| |||||  |||||| ||||  |||||| ||||||| ||||||| ||| |||||  |||||| ||||| |||| | | ||| ||||    
T  43050231 ttcggattatagaatccaaacgacataaataccctgtaaaaacctccaaa-acacgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaa 43050133  T
Q  217 actcataggataggaaaagtaatg 240  Q
    ||||||||| | ||||||||||||    
T  43050132 actcatagggtgggaaaagtaatg 43050109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 13019646 - 13019763
Alignment:
Q  122 attatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactca 221  Q
    |||||| ||| | ||| |||||||||| |||||||||||| ||||  ||| || |||  ||||  |||||  ||||| || |||||| ||||||||||||    
T  13019646 attatagaatccgaacggcataaacactccataaaaatcttcaaaatcacattgaaacgtttcagattttcaaatccgaaaaggacacgcgagaaactca 13019745  T
Q  222 taggataggaaaagtaat 239  Q
    |||| | | |||||||||    
T  13019746 tagggtggaaaaagtaat 13019763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 22417352 - 22417303
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaa 166  Q
    |||| |||||||||| ||||| |||||||||||| ||||||| |||||||    
T  22417352 ttcggattatataatccaaacggcataaacaccctataaaaacctccaaa 22417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 4377180 - 4377235
Alignment:
Q  141 ataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatc 197  Q
    ||||||||||||||||| | |  ||| ||||||||||||||||| ||||||||||||    
T  4377180 ataaacaccccataaaacttttaaaa-acacgttaaaatatttccaattttagaatc 4377235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 25314747 - 25314699
Alignment:
Q  187 attttagaatccaaataggacatgcgagaaactcataggataggaaaag 235  Q
    |||||||||||| |||||| | ||||||||||||||||| | |||||||    
T  25314747 attttagaatccgaatagggcgtgcgagaaactcatagggtgggaaaag 25314699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 40491777 - 40491706
Alignment:
Q  134 aaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaatagg 205  Q
    |||| ||||||||||| |||||||| ||||||| ||||||| ||| |||| | |||||||||||||||||||    
T  40491777 aaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattttggattttagaatccaaatagg 40491706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 8217200 - 8217100
Alignment:
Q  140 cataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaat 239  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||||   |||||| |  ||||||||||| |||| | |||||||||||    
T  8217200 cataaacaccccataaaaatct-caaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaaactcgtagg-tgggaaaagtaat 8217103  T
Q  240 gac 242  Q
    |||    
T  8217102 gac 8217100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 37928069 - 37928133
Alignment:
Q  176 aaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||| | | |||||||| |||||    
T  37928069 aaatatttcgtattatagaatccaaataggacgtgcgagaaactcacacggtaggaaaaataatg 37928133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 22023744 - 22023823
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaat 196  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||| ||||||| ||| ||| ||| |||| |||||| |||||    
T  22023744 ttcgaattatagaattccaacggcataaacaccctataaaaagctccaaaaacatgttgaaacatttggaatttcagaat 22023823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 27707205 - 27707287
Alignment:
Q  141 ataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatcc-aaataggacatgcgagaaactcata 223  Q
    ||||||| ||||||||||| |||||| ||| |||||||||| ||||||||| |||||| |||||||   |||||||||||||||    
T  27707205 ataaacatcccataaaaatttccaaa-acatgttaaaatatatcgaatttttgaatccaaaatagggtgtgcgagaaactcata 27707287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 32177312 - 32177384
Alignment:
Q  170 acgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatgac 242  Q
    ||||||||| |||||  |||||||||| | |||||| | || ||||||||||||||||  |||||||||||||    
T  32177312 acgttaaaacatttcagattttagaatacgaatagggcgtgtgagaaactcataggatgagaaaagtaatgac 32177384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 33043962 - 33043864
Alignment:
Q  139 gcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaa 238  Q
    |||||||||| |||||||| |||   || |||||||||||||||||  ||||||||||  |||||||   ||| ||||||||||||||| | ||||||||    
T  33043962 gcataaacactccataaaa-tcttttaaaacacgttaaaatatttcagattttagaatttaaatagggtgtgcaagaaactcataggatggaaaaagtaa 33043864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 35631228 - 35631302
Alignment:
Q  168 acacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatgac 242  Q
    ||||||| |||||||||  ||||||||||  ||||| | | | ||||||||||||||| | ||||||||||||||    
T  35631228 acacgtttaaatatttcagattttagaatagaaatacggcgtccgagaaactcatagggtgggaaaagtaatgac 35631302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 39965367 - 39965302
Alignment:
Q  142 taaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggac 207  Q
    ||||||| | ||||||||||| ||| |||  |||||||||||||||||||| ||||  ||||||||    
T  39965367 taaacactctataaaaatctctaaaaacatattaaaatatttcgaattttaaaatctgaataggac 39965302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 17223183 - 17223063
Alignment:
Q  120 gaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaact 219  Q
    |||||||| ||| | ||| | ||| ||||| |||||||| || |||| ||||||| |||||||||  ||||||||||| ||||| | |  | ||||||||    
T  17223183 gaattatagaatccgaacagtatacacacctcataaaaacctgcaaaaacacgttgaaatatttcagattttagaatctaaataaggcgcgtgagaaact 17223084  T
Q  220 cataggataggaaaagtaatg 240  Q
    |||  | | ||||||||||||    
T  17223083 catcaggtgggaaaagtaatg 17223063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 27549740 - 27549812
Alignment:
Q  168 acacgttaaaatatttcgaattttagaatccaaataggacatgcgagaaactcataggataggaaaagtaatg 240  Q
    ||||||| ||| ||||| |||||||||||| ||||| ||  ||||||||||||||| ||  | ||||||||||    
T  27549740 acacgttgaaacatttcaaattttagaatctaaatatgatgtgcgagaaactcatatgacggaaaaagtaatg 27549812  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 51 - 117
Alignment:
Q  117 ttcgaattatataattcaaactgcataaacaccccataaaaatctccaaacacacgttaaaatatttc 184  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  51 ttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaa-acacgtttaaatatttc 117  T

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