View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1455_low_8 (Length: 320)
Name: NF1455_low_8
Description: NF1455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1455_low_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 47395314 - 47395629
Alignment:
| Q |
5 |
cacccccaacacatcacaaatttcaacatatagcttaaaactatccctcacaatctggtaaatcgcaaccaacactaacctattattcttagcagcacca |
104 |
Q |
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| T |
47395314 |
cacccccaacacatcacaaatttcaacatatagcttaaaactatccctcacaatctggtaaatcgcaaccaacactaacctattattcttagcagcacca |
47395413 |
T |
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| Q |
105 |
tgtggtttacaacctaatacactgtcgagaatttgaagcaaatgcttcaacctatccaaaaccctctcagctttcatttccctcgcaggggtaacatcac |
204 |
Q |
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| T |
47395414 |
tgtggtttacaacctaatacactgtcgagaatttgaagcaaatgcttcaacctatccaaaaccctctcagctttcatttccctcacaggggtaacatcac |
47395513 |
T |
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| Q |
205 |
tcttctcctcattcctcttcacagaacccaattcaccatccccagaatcaacaacccctttcaatttcttcttataaacccaaaattcaaccttttaatc |
304 |
Q |
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| T |
47395514 |
tcttctcctcattcctcttcacagaaccaaattcaccatccccagaatcaacaacacctttcaatttcttattataaaccaaaaattcaaccttttgatc |
47395613 |
T |
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| Q |
305 |
cagatacattccataa |
320 |
Q |
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| T |
47395614 |
aagatacattgcataa |
47395629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 47835296 - 47835170
Alignment:
| Q |
190 |
caggggtaacatcactcttctcctcattcctcttcacagaacccaattcaccatccccagaatcaacaacccctttcaatttcttcttataaacccaaaa |
289 |
Q |
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| T |
47835296 |
caggggtaacctcactcttctc-tcattcctcttcacagaaccaaattcagcatcccgagatgtttcaacacctttcaat---ttcttataaaccaaaaa |
47835201 |
T |
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| Q |
290 |
ttcaaccttttaatccagatacattccataa |
320 |
Q |
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| T |
47835200 |
ttcaaccttttgatcaagatacattgcataa |
47835170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 47835548 - 47835635
Alignment:
| Q |
38 |
cttaaaactatccctcacaatctggtaaatcgcaaccaacactaacctattattct----tagcagcaccatgtggtttacaacctaa |
121 |
Q |
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| T |
47835548 |
cttaaaactacccctcacaatctggtaaatcgcaaccaacactaaccaattattcttaactagcaacaccatgcggtttacgacctaa |
47835635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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