View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_high_2 (Length: 371)
Name: NF14560_high_2
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2348661 - 2348802
Alignment:
| Q |
1 |
atcgtaactcaatccgataatcttagccgtggtaattttcaaattccaaaacaacacttaaaatcgtgttcaagatcaattataatttacgttatgtgag |
100 |
Q |
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| T |
2348661 |
atcgtaactcaatccgataatcttagccgtggtaattttcaaattccaaaacaacacttaaaatcgtgttcaagatcaattataatttacgttatgtgag |
2348760 |
T |
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| Q |
101 |
ggagatatatattattggtttttgtacacatatccacaaaca |
142 |
Q |
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| T |
2348761 |
ggagatatatattattggtttttgtacacatattcacaaaca |
2348802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 207 - 357
Target Start/End: Original strand, 2348867 - 2349019
Alignment:
| Q |
207 |
aagctagcattcaagagtaatacaact--aattctacttctatccaccaacctcatccaaaacacaacaccatctagctacaatggatttagatttaagc |
304 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348867 |
aagctagcattcaagagtaatacaactctaattctacttctatccaccaacctcgtacaaaacacaacaccatctagctacaatggatttagatttaagc |
2348966 |
T |
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| Q |
305 |
agtttaataaacgctacaacaattgcactcctaatttctctaattcccctatg |
357 |
Q |
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| T |
2348967 |
agtttaataaacgccacaacaattgcactcctaatttctctaattcccctatg |
2349019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2348290 - 2348349
Alignment:
| Q |
1 |
atcgtaactcaatccgataatcttagccgtggtaattttcaaattccaaaacaacactta |
60 |
Q |
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|||||||||||||||||||||||| | |||| |||||||| ||| ||||||||||||| |
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| T |
2348290 |
atcgtaactcaatccgataatcttttcgatggtgattttcaatttcgaaaacaacactta |
2348349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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