View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_high_5 (Length: 298)
Name: NF14560_high_5
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_high_5 |
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| [»] scaffold0076 (3 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 57098 - 57183
Alignment:
| Q |
14 |
caatcaatact-atacaaatctatgaggattcacatatgatagataaaaaacatgaaattttcaaccaaacatcaatcacaacatc |
98 |
Q |
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| T |
57098 |
caatcaatacttatacaaatccatgaggattcacatatgatagataaaaaacctgaaattttcaaccaaacatcaatcacaacatc |
57183 |
T |
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Target: scaffold0076; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 59317 - 59371
Alignment:
| Q |
214 |
attcatgcgtagataattataagcagtgtgagatatttgagctaaactcactaca |
268 |
Q |
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| T |
59317 |
attcatgagtagataattacaagcagtgtgagatatttgagctaaactcattaca |
59371 |
T |
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Target: scaffold0076; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 57247 - 57291
Alignment:
| Q |
171 |
aatcacgataagtggataaaatacaagtgaagatggatccttcat |
215 |
Q |
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| T |
57247 |
aatcacgatatgtggataaaatacaagtgaagatggatccttcat |
57291 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 51074999 - 51075054
Alignment:
| Q |
214 |
attcatgcgtagataattataagcagtgtgagatatttgagctaaactcactacat |
269 |
Q |
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| T |
51074999 |
attcatgagtagataattacaatcagtgtgagatatttgagctaaattcattacat |
51075054 |
T |
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