View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14560_low_1 (Length: 500)

Name: NF14560_low_1
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14560_low_1
NF14560_low_1
[»] chr1 (9 HSPs)
chr1 (109-484)||(9988166-9988537)
chr1 (109-484)||(9993028-9993393)
chr1 (237-337)||(9998292-9998391)
chr1 (361-443)||(9998426-9998508)
chr1 (267-392)||(9979108-9979225)
chr1 (277-379)||(20432600-20432701)
chr1 (109-159)||(9978567-9978617)
chr1 (395-439)||(9975237-9975281)
chr1 (111-159)||(9978600-9978648)
[»] chr4 (1 HSPs)
chr4 (341-443)||(51988758-51988857)
[»] chr8 (1 HSPs)
chr8 (403-443)||(41490992-41491032)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 109 - 484
Target Start/End: Original strand, 9988166 - 9988537
Alignment:
Q  109 atggcaaccttttgaccaaaattaaatacaaatggcaacgctttgaccaaannnnnnngacctagacaaaaccttttgaccataattaatgtattttttg 208  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||       |||||| || ||||||||||||||||||||||||||||||||    
T  9988166 atggcaaccttttgaccaaaattaaatacaaatggcagagttttgaccaaatttttttgacctaaactaaaccttttgaccataattaatgtattttttg 9988265  T
Q  209 accctaattttgttcattcgatcctcaa-ttgctatatatacacacacaactgctcctcctcagcatcgcctacttttcaaaatatgttggcagcagcag 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    |||||||    
T  9988266 accctaattttgttcattcgatcctcaatttgctatatatacacacacagctgctcctcctcagcattgcctacttttcaaaatatgtt---cgcagcag 9988362  T
Q  308 ctccttaactattttgtcgcaaaaattcaatgcagacaaatggattgggcaggtatatatcttttcaattataattccacattttcattcactcatttgt 407  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  9988363 ctccataactattttgttgcaaaaattcaatgca-acaaatggatgttgcaggtatatatcttttcaattataattccacattttcatttattcatttgt 9988461  T
Q  408 ttgttgcgtttatcaattttatttcttttaatctcttcacctgcagggaacactttgatgggcagcgtgttggatat 484  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9988462 ttgttgcgtttatcaa-tttatttcttttaatctcttcacctgcagggaacactttgatgggcagcgtgttgaatat 9988537  T

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Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 109 - 484
Target Start/End: Original strand, 9993028 - 9993393
Alignment:
Q  109 atggcaaccttttgaccaaaattaaatacaaatggcaacgctttgaccaaannnnnnngacctagacaaaaccttttgaccataattaatgtattttttg 208  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||||||           |  ||  || ||||||||||||||||||||||||||||    
T  9993028 atggcaaccttttgaccataattaaatacgaatggcaacgttttgaccaaatttttt-----tttacctaaacttttgaccataattaatgtattttttg 9993122  T
Q  209 accctaattttgttcattcgatcctcaatt-gctatatatacacacacaactgctcctcctcagcatcgcctacttttcaaaatatgttggcagcagcag 307  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||| ||||||||      
T  9993123 accctaattttgttcattcaatcctcaatttgctatatatacacacacaactgctcctc---agcattgcctacttttcaaaatatgttcgcagcagc-- 9993217  T
Q  308 ctccttaactattttgtcgcaaaaattcaatgcagacaaatggattgggcaggtatatatcttttcaattataattccacattttcattcactcatttgt 407  Q
     ||  |||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  9993218 -tcaataactattttgttgcaaaaattcaatgcagacaaatggatgttgcaggtatatatcttttcaattataattccacattttcatttattcatttgt 9993316  T
Q  408 ttgttgcgtttatcaattttatttcttttaatctcttcacctgcagggaacactttgatgggcagcgtgttggatat 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9993317 ttgttgcgtttatcaattttatttcttttaatctcttcacctgcagggaacactttgatgggcagcgtgttggatat 9993393  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 9998292 - 9998391
Alignment:
Q  237 ttgctatatatacacacacaactgctcctcctcagcatcgcctacttttcaaaatatgttggcagcagcagctccttaactattttgtcgcaaaaattca 336  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||| || ||| |||||||||||||    
T  9998292 ttgctatatatacacacataacagctcctcctcaacaccgcctacctttcaaaatatgttggccgcagcagctccttaagtacttt-tcgcaaaaattca 9998390  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 9998426 - 9998508
Alignment:
Q  361 tatatatcttttcaattataattccacattttcattcactcatttgtttgttgcgtttatcaattttatttcttttaatctct 443  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||  |||||||| |||||||||||    
T  9998426 tatatatcttttcaattataattccacacttttattcattcatttgtttgttgcgtttatcttttttatttattttaatctct 9998508  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 392
Target Start/End: Original strand, 9979108 - 9979225
Alignment:
Q  267 ctcagcatcgcctacttttcaaaatatgttggcagcagcagctccttaactattttgtcgcaaaaattcaatgcagacaaatggattgggcaggtatata 366  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||| | | ||||||||||        || ||||   |||||||| ||    
T  9979108 ctcagcaccgcctacctttcaaaatatgttggctgcagcagctccttaactacttttt-gaaaaaattcaac-------aacggatgttgcaggtatgta 9979199  T
Q  367 tcttttcaattataattccacatttt 392  Q
    ||||||||||||||||| ||||||||    
T  9979200 tcttttcaattataatttcacatttt 9979225  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Original strand, 20432600 - 20432701
Alignment:
Q  277 cctacttttcaaaatatgttggcagcagcagctccttaactattttgtcgcaaaaattcaatgcagacaaatggattgggcaggtatatatcttttcaat 376  Q
    ||||||||| ||||||||||||| ||    |||||||||||| ||| |||||||||||||| ||  ||||||| ||   | |||||||||||||||||||    
T  20432600 cctacttttaaaaatatgttggccgccagtgctccttaactacttt-tcgcaaaaattcaacgctaacaaatgaatgttgtaggtatatatcttttcaat 20432698  T
Q  377 tat 379  Q
    |||    
T  20432699 tat 20432701  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 9978567 - 9978617
Alignment:
Q  109 atggcaaccttttgaccaaaattaaatacaaatggcaacgctttgaccaaa 159  Q
    ||||||||||||||||||||| |||||| ||| ||||||  ||||||||||    
T  9978567 atggcaaccttttgaccaaaaataaataaaaagggcaaccttttgaccaaa 9978617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 9975237 - 9975281
Alignment:
Q  395 ttcactcatttgtttgttgcgtttatcaattttatttcttttaat 439  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||    
T  9975237 ttcattcatttgtttgttgcgtttattattttgatttcttttaat 9975281  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 9978600 - 9978648
Alignment:
Q  111 ggcaaccttttgaccaaaattaaatacaaatggcaacgctttgaccaaa 159  Q
    ||||||||||||||||||| |||||| |||| |||||  ||||||||||    
T  9978600 ggcaaccttttgaccaaaaataaataaaaattgcaactttttgaccaaa 9978648  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 443
Target Start/End: Original strand, 51988758 - 51988857
Alignment:
Q  341 agacaaatggattgggcaggtatatatcttttcaattataattccacattttcattcactcatttgtttgttgcgtttatcaattttatttcttttaatc 440  Q
    ||||||||||||   |||||||||||  |||||| |||| |||||| | |||   ||| | |||||||||||| |||||| | |||||||||||||||||    
T  51988758 agacaaatggatgtcgcaggtatatacattttcacttatgattccatacttt---tcatttatttgtttgttgagtttattatttttatttcttttaatc 51988854  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 41491032 - 41490992
Alignment:
Q  403 tttgtttgttgcgtttatcaattttatttcttttaatctct 443  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  41491032 tttgtttgttgagtttattatttttatttcttttaatctct 41490992  T

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