View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_low_14 (Length: 238)
Name: NF14560_low_14
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25759333 - 25759099
Alignment:
| Q |
1 |
tcgcactaaattatatatatgattttaatatttataga-------------ttgatgaattaataaattaattacaaacaagcctgacttatagatcata |
87 |
Q |
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| T |
25759333 |
tcgcactaaattatatatatgattttaatatttatagaacatgttttatatttgatgaattaataaattaattacaaacaagcctgacttatagatcata |
25759234 |
T |
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| Q |
88 |
gcctatgtggccttggtagctcaactatacatatttgaaatgtaggttggaagaggttgagagaatgcgtgaaactaaaaggaaagtaagaataagatat |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25759233 |
gcctatgtggccttggtagctcaactatacatatttgaaatgtaggttggaagaggttgagagaattcgtgaaactaaaaggaaagtaagaataagatat |
25759134 |
T |
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| Q |
188 |
aagttaaaagtgaaaagggatattagttgaaacaaa |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
25759133 |
aagttaaaagtgaaaagggata-tagttgaaacaaa |
25759099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 29478944 - 29478760
Alignment:
| Q |
38 |
attgatgaattaataaattaattacaaacaagcctgacttatagatcatagcctatgtggccttggtagctcaactatacatatttgaaatgtaggttgg |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||| |||||||||||||||| ||| ||||||||| |
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| T |
29478944 |
attgatgaattaataaattaattacaaacaagcctgacttatagatcatatcttatgtggtctttgtagttcaactatacatatttaaaaggtaggttgg |
29478845 |
T |
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| Q |
138 |
aagaggttgagagaatgcgtgaaactaaaaggaaagtaagaataagatataagttaaaagtgaaaagggatattagttgaaacaaa |
223 |
Q |
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| T |
29478844 |
aggaggttgagagaatgcgtgaaagtgaaaggaaagtaaaaatgagatatgagttaaaagtaaaaagggata-tggttgaaacaaa |
29478760 |
T |
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