View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_low_3 (Length: 329)
Name: NF14560_low_3
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 34157524 - 34157287
Alignment:
| Q |
16 |
aatataggatgttacaaaattaagttaaaatttcctatgcaattccgacggaattcagttaagacttcatacgattttcggacatatttaagttaaattt |
115 |
Q |
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| T |
34157524 |
aatataggatgttacaaaattaagttaaaatttcctacgcaattcagacggaattcggttaagacttcatacgattttcggacatatttaagttaaattt |
34157425 |
T |
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| Q |
116 |
ttccacaattttcaaacagaattaagctaacccttataatcactaatgacttttaaattttaatgctcaacattttgaaacaaaattatgagcttatttg |
215 |
Q |
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| T |
34157424 |
ttccacaattttcagacagaattaagctaacccttatattcagtgatgacttttaaattttaatgctcaacattttgaaacaaaattatgagcttatttg |
34157325 |
T |
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| Q |
216 |
cgagagaactgccacataactaataatttaatttgctt |
253 |
Q |
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| T |
34157324 |
cgagagaactgccacataactaataatttaatttgctt |
34157287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 33585087 - 33585001
Alignment:
| Q |
101 |
atttaagttaaatttttccacaattttcaaacagaattaagctaacccttataatcactaatgacttttaaattttaatgctcaaca |
187 |
Q |
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| T |
33585087 |
atttaagttaaattttccaacgattttcgaacgaaattaagcaaacccttatattcaatgatgacttttaaatttcaatgctcaaca |
33585001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 8513093 - 8513199
Alignment:
| Q |
33 |
aattaagttaaaatttcctatgcaattccgacggaattcagttaagacttcatacgattttcggacatatttaagttaaatttttccacaattttcaaac |
132 |
Q |
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| T |
8513093 |
aattaagttaaaatttcctacggatttcggacggaatgaagttaaaaatttatacgattttcggacggatttaaattaaatattcctacgattttcaaac |
8513192 |
T |
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| Q |
133 |
agaatta |
139 |
Q |
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||||||| |
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| T |
8513193 |
agaatta |
8513199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 8513183 - 8513249
Alignment:
| Q |
187 |
attttgaaacaaaattatgagcttatttgcgagagaactgccacataactaataatttaatttgctt |
253 |
Q |
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| T |
8513183 |
attttcaaacagaattatgggcttatttgcgatagaattgccataaaactaataatttaatttgctt |
8513249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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