View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_low_7 (Length: 297)
Name: NF14560_low_7
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 34157128 - 34156840
Alignment:
| Q |
13 |
atcacaaaataacatgtctaaattgttcatcacaaatttgaataatactttgttcaaaagatgacatgctcgaacacgcgaca----------------- |
95 |
Q |
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| T |
34157128 |
atcacaaaataacatgtctaaattgttcatcataaatttgaataatactttgttcaaaagatgacgtgctcgaacacgtgacaaacacatacacgctcaa |
34157029 |
T |
|
| Q |
96 |
---cacaccagcagggcgctcattttgcagattgagagcattaatctttttattattacctgcaattcttctttccccgttccttctcgtatgatgtcat |
192 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
34157028 |
gtgcacaccagcagggcactcattttgcagattgagagcattaatctttttattattacctgcaattcttctttcaccgttccttctcgtctgatgtcat |
34156929 |
T |
|
| Q |
193 |
ctttttcacaaggttgaggctccaaacatactcgcttcgcaagcattgacgataaacaactcaaaacgatgcaaatagctaagcattat |
281 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34156928 |
ctttttcacaaggtcgaggctccaaacatactcgcttcgcaagcattgacgataaacaactcaaaacgatgcaaatagctaagcattat |
34156840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 7187240 - 7187157
Alignment:
| Q |
182 |
tatgatgtcatctttttcacaaggttgaggctccaaacatactcgcttcgcaagcattgacgataaacaactcaaaacgatgca |
265 |
Q |
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|||| |||||||||||||||||||||||| ||||||| | ||| | ||||||||||| |||||| || ||||||| ||||| |
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| T |
7187240 |
tatggtgtcatctttttcacaaggttgagactccaaaaacacttacgctgcaagcattgatgataaataagtcaaaacaatgca |
7187157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 8513490 - 8513600
Alignment:
| Q |
168 |
cccgttccttctcgtatgatgtcatctttttcacaaggttgaggctccaaacatactcgcttcgcaagcattgacgataaacaactcaaaacgatgcaaa |
267 |
Q |
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|||| |||| ||| |||| |||||||||||| ||||||||||||||||||||| |||| | ||||||||||| ||||||||| ||||||| ||| ||| |
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| T |
8513490 |
cccgctcctcctcatatggtgtcatcttttttacaaggttgaggctccaaacacactcacactgcaagcattgatgataaacaagtcaaaactatgtaaa |
8513589 |
T |
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| Q |
268 |
tagctaagcat |
278 |
Q |
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||||||||||| |
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| T |
8513590 |
tagctaagcat |
8513600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 47911451 - 47911368
Alignment:
| Q |
182 |
tatgatgtcatctttttcacaaggttgaggctccaaacatactcgcttcgcaagcattgacgataaacaactcaaaacgatgca |
265 |
Q |
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|||| |||||||||||||||||||||||| ||||||| | ||| | ||||||||||| |||||| || ||||||| ||||| |
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| T |
47911451 |
tatggtgtcatctttttcacaaggttgagactccaaaaacacttacgctgcaagcattgatgataaataagtcaaaacaatgca |
47911368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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