View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_low_8 (Length: 282)
Name: NF14560_low_8
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 39983811 - 39983576
Alignment:
| Q |
19 |
aatgcataaacaatgaatgaaggtatagaaatcagataaatgtgaagtaaaaatagaaaaacggatgtagctcaagcttatatgattctctaattagatg |
118 |
Q |
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| T |
39983811 |
aatgcataaacaatgaatgaaggtatagaaatcagataaatgtgaagta------------------tagctcaagcttatatgatgctctaattagatg |
39983730 |
T |
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| Q |
119 |
ccacatttaatttattatagaatgtttcttcaaaataaatccataccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactctta |
218 |
Q |
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| T |
39983729 |
ccacatttaatttattatagaatgtttcttcaaaataaatccataccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactctta |
39983630 |
T |
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| Q |
219 |
tagctaaatccttgaggctttgacatattaattgccaacacatttccagaataa |
272 |
Q |
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| T |
39983629 |
tagctaaatccttgaggctttgacatattaattgccaacacatttccaggataa |
39983576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 44916148 - 44916038
Alignment:
| Q |
162 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacat |
261 |
Q |
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| T |
44916148 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccactcttgtatctaaacccctgaggctttgacatatgaagagccaacacat |
44916049 |
T |
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| Q |
262 |
ttccagaataa |
272 |
Q |
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|||||| |||| |
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| T |
44916048 |
ttccaggataa |
44916038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 44899925 - 44899820
Alignment:
| Q |
162 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacat |
261 |
Q |
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|||||||||| |||||| |||||||||||||| |||| |||||| ||||| ||||| || ||||| || | ||| ||||||| || || || ||||||| |
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| T |
44899925 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacatgaagagctaacacat |
44899826 |
T |
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| Q |
262 |
ttccag |
267 |
Q |
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|||||| |
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| T |
44899825 |
ttccag |
44899820 |
T |
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