View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14560_low_9 (Length: 275)
Name: NF14560_low_9
Description: NF14560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14560_low_9 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 40 - 272
Target Start/End: Original strand, 56882 - 57118
Alignment:
| Q |
40 |
ttttactatataccctacttttctt----aatttaactaacatgacaagttttgtcattgatattatagataatatgaggaacaagaatcacatagacac |
135 |
Q |
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| T |
56882 |
ttttactatataccctacttttcttttctaaataaaataacaagacaagttttgtcattgatattatagataatatgaggaacaagaatcacatagacac |
56981 |
T |
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| Q |
136 |
atgtgattatctatcctctacacaatatttcacctcatcagtgctcctataaacataccataattcttagtctttaaaacaagaatcacatagactaacc |
235 |
Q |
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| T |
56982 |
atgtgattatctatactctacacaatattttacctcatcattgctcctataaacatactataacccttagt-tttaacacaagaatcacatagactaact |
57080 |
T |
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| Q |
236 |
aacatctccaaacaagtcaatcaatac-tatacaaatc |
272 |
Q |
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| T |
57081 |
aacatctccaaacaagccaatcaatacttatacaaatc |
57118 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 53744165 - 53744222
Alignment:
| Q |
214 |
acaagaatcacatagactaaccaacatctccaaacaagtcaatcaatactatacaaat |
271 |
Q |
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| T |
53744165 |
acaagaatcacctagaccagctaacatctccaaacaagccaatccatacaatacaaat |
53744222 |
T |
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