View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14561_low_1 (Length: 326)
Name: NF14561_low_1
Description: NF14561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14561_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 42305328 - 42305025
Alignment:
| Q |
19 |
ctaaattggttgaatctccgtcttagtatggcatagtcaagagaagtgctttccgacacataattgctagaggtgattgagttggcaatttcttcaatgc |
118 |
Q |
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| T |
42305328 |
ctaaattggttgattctccgtcttaatacggcatagtcaagagaagtgcttttcgacacataattgctggaggtgattgagttggcaatttcttcaatgc |
42305229 |
T |
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| Q |
119 |
ttgttttggaaccctttcaagttcacgtgctaattcttcactaccaacattggaaattacttgaaaaaatataccaattggatcggagattagaatggat |
218 |
Q |
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| T |
42305228 |
ttgttttggaaccctttcaagttcacgtgctaattcttcactaccaacattgg-aattacttgaaaaagtataccaattggattggagattagaatggat |
42305130 |
T |
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| Q |
219 |
gtaaggtgtaacggagttatttcagcatttcctaagcttattgatagtctttttagcactaacaagttcctcatacgccttgcaagtaaaatggtctcga |
318 |
Q |
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| T |
42305129 |
gtaaggtgtaacggagttatttcagcatttcctaagcttattgatagtctttttagcactaacaagttcctcttactccttgcaagtaaaatggtcttga |
42305030 |
T |
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| Q |
319 |
ttcat |
323 |
Q |
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||||| |
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| T |
42305029 |
ttcat |
42305025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 52 - 289
Target Start/End: Original strand, 42304443 - 42304675
Alignment:
| Q |
52 |
tagtcaagagaagtgctttccgacacataat-tgctagaggtgattgagttggcaatttcttcaatgcttgttttg-gaaccctttcaagttcacgtgct |
149 |
Q |
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| T |
42304443 |
tagtcaagagaagtgcttttcgatacataatctgctggaggtgactgagttggcaatttcttcaatgcttgtttttagaaccctttcaagttcacgtgct |
42304542 |
T |
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| Q |
150 |
aattcttcactaccaacattggaaattacttgaaaaaatataccaattggatcggagattagaatggatgtaaggtgtaacggagttatttcagcatttc |
249 |
Q |
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| T |
42304543 |
aattcttcaccaccaacattggaacttacttggaaaaata-accaaatggat-----attagaatggatgcaaggtataagggagttatctcaacatgtc |
42304636 |
T |
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| Q |
250 |
ctaagcttattgatagtctttttagcactaacaagttcct |
289 |
Q |
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| T |
42304637 |
ctaaacttattgctagtc-tcttagcactaacaagttcct |
42304675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 45465916 - 45465764
Alignment:
| Q |
88 |
gaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtgctaattcttcactaccaacattggaaattacttgaaaaaa |
187 |
Q |
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|||| ||||||| ||| | |||||| ||||||||||| ||| | ||||| |||||||| ||||||||| | ||||||| |||||| |||| || || |
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| T |
45465916 |
gaggagattgagatggaagtttctttaatgcttgtttcaaaacacgttcaacggcacgtgctgattcttcaccagcaacatttgaaattgcttggaagaa |
45465817 |
T |
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| Q |
188 |
tataccaattggatcggagattagaatggatgtaaggtgtaacggagttattt |
240 |
Q |
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| T |
45465816 |
aataccgttaggatcagaaactagaattgatgcaaggtgtaagggagtgattt |
45465764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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