View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14561_low_2 (Length: 251)

Name: NF14561_low_2
Description: NF14561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14561_low_2
NF14561_low_2
[»] chr4 (6 HSPs)
chr4 (57-144)||(49880353-49880442)
chr4 (168-251)||(36608636-36608721)
chr4 (179-251)||(43174603-43174676)
chr4 (182-251)||(55933113-55933184)
chr4 (190-251)||(22028367-22028429)
chr4 (210-251)||(49880256-49880297)
[»] chr5 (2 HSPs)
chr5 (173-251)||(9498637-9498716)
chr5 (167-250)||(27502012-27502097)
[»] chr1 (6 HSPs)
chr1 (167-249)||(50051665-50051748)
chr1 (168-251)||(50052001-50052085)
chr1 (164-251)||(5319939-5320027)
chr1 (190-251)||(14318963-14319025)
chr1 (213-251)||(44043796-44043834)
chr1 (181-248)||(45493965-45494033)
[»] chr8 (2 HSPs)
chr8 (167-251)||(3670156-3670241)
chr8 (181-251)||(6876852-6876924)
[»] chr7 (1 HSPs)
chr7 (168-251)||(1085593-1085678)
[»] chr2 (3 HSPs)
chr2 (168-251)||(37106020-37106105)
chr2 (168-251)||(42514745-42514830)
chr2 (173-251)||(6421827-6421907)
[»] scaffold0391 (1 HSPs)
scaffold0391 (195-251)||(1111-1168)
[»] chr6 (3 HSPs)
chr6 (164-251)||(2578416-2578505)
chr6 (168-251)||(12071668-12071753)
chr6 (168-219)||(16454704-16454756)
[»] chr3 (2 HSPs)
chr3 (195-251)||(37990982-37991039)
chr3 (173-251)||(29644884-29644964)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 49880442 - 49880353
Alignment:
Q  57 ctcagtttctttacgacttgcactcaaatttcagtacatcaaacac--atacaaggactgaaaatatataaagtcccatatgatatagct 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  49880442 ctcagtttctttacgacttgcactcaaatttcagtacatcaaacacatatacaaggactgaaaatatataaagtcccatatgatatagct 49880353  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 36608636 - 36608721
Alignment:
Q  168 tgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaa-catataaataagagagacaccacactcttaccc 251  Q
    |||| |||||||||||||||| ||||| ||||||| || ||||||||||||| || |  | | |||||||||||||||||||||||    
T  36608636 tgttgggtcacgaggggagcttgggggaccgtccacatcgaggctagaacaaccacactagtgagagagacaccacactcttaccc 36608721  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 43174676 - 43174603
Alignment:
Q  179 gaggggagctagggggccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    ||||||||||||||  ||||||| ||  |||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  43174676 gaggggagctagggaaccgtccacatcaaggctacaacaaccatataaacaagagagacgccacactcttaccc 43174603  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 55933113 - 55933184
Alignment:
Q  182 gggagctaggggg-ccgtccatattgaggctagaacaaca-tataaataagagagacaccacactcttaccc 251  Q
    ||||||| ||||| ||||||| || ||||||||||||||  || || |||||||||||||||||||||||||    
T  55933113 gggagcttgggggaccgtccacatcgaggctagaacaactgtacaagtaagagagacaccacactcttaccc 55933184  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 22028367 - 22028429
Alignment:
Q  190 gggggccgtccatattgaggctagaacaacat-ataaataagagagacaccacactcttaccc 251  Q
    |||| ||||||| ||||||||||||||||| | | ||  ||||||||||||||||||||||||    
T  22028367 ggggaccgtccacattgaggctagaacaacctcacaagcaagagagacaccacactcttaccc 22028429  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 49880297 - 49880256
Alignment:
Q  210 ctagaacaacatataaataagagagacaccacactcttaccc 251  Q
    ||||||||||| ||||| |||||||||||||| |||||||||    
T  49880297 ctagaacaacacataaacaagagagacaccacgctcttaccc 49880256  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 9498637 - 9498716
Alignment:
Q  173 ggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaacatataaataagagagacaccacactcttaccc 251  Q
    |||||||||||||||||||||| ||||||| |||||||||||| || || ||||| ||||||||||||||||||||||||    
T  9498637 ggtcacgaggggagctagggggaccgtccacattgaggctagaccagcacataaacaagagagacaccacactcttaccc 9498716  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 27502012 - 27502097
Alignment:
Q  167 ttgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaa-catataaataagagagacaccacactcttacc 250  Q
    ||||| ||||| |||||||||||||||| ||||||| || |||| |||||||| || | ||  ||||||||||||||||| |||||    
T  27502012 ttgttgggtcatgaggggagctagggggaccgtccacatcgaggatagaacaaccacacaagcaagagagacaccacacttttacc 27502097  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 50051665 - 50051748
Alignment:
Q  167 ttgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaacatataaataagagagacaccacactcttac 249  Q
    ||||| |||||||||||||||||||||| ||||||| || || |||||||||||| ||||| ||||||||||||||||||||||    
T  50051665 ttgttgggtcacgaggggagctagggggaccgtccacatcgatgctagaacaacacataaacaagagagacaccacactcttac 50051748  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 50052001 - 50052085
Alignment:
Q  168 tgttaggtcacgaggggagctagggggcc-gtccatattgaggctagaacaacatataaataagagagacaccacactcttaccc 251  Q
    |||| |||||||||||||||| ||||| | ||||| || |||| |||||||||| ||||| ||||||||||||||||||||||||    
T  50052001 tgttgggtcacgaggggagctcgggggactgtccacatcgaggttagaacaacacataaacaagagagacaccacactcttaccc 50052085  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 5319939 - 5320027
Alignment:
Q  164 atattgttaggtcacgaggggagctagggggccgtccatattgaggctagaacaa-catataaataagagagacaccacactcttaccc 251  Q
    |||||||| |||||||| ||||||| |||| ||||| | |||||||||||||||| || ||||  ||||||||||| ||||||||||||    
T  5319939 atattgttgggtcacgaagggagcttggggaccgtctacattgaggctagaacaaccacataagcaagagagacactacactcttaccc 5320027  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 14319025 - 14318963
Alignment:
Q  190 gggggccgtccatattgaggctagaacaacat-ataaataagagagacaccacactcttaccc 251  Q
    |||| ||||||| |||||||||||||||||   | ||||||||||||||||||||||||||||    
T  14319025 ggggaccgtccacattgaggctagaacaaccgcacaaataagagagacaccacactcttaccc 14318963  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 44043796 - 44043834
Alignment:
Q  213 gaacaacatataaataagagagacaccacactcttaccc 251  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  44043796 gaacaacacataaacaagagagacaccacactcttaccc 44043834  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 45493965 - 45494033
Alignment:
Q  181 ggggagctagggggccgtccatattgaggctagaacaac-atataaataagagagacaccacactctta 248  Q
    |||||||| |||| ||||||| || |||||| ||||||| | ||||  |||||||||||||||||||||    
T  45493965 ggggagctgggggaccgtccacatcgaggcttgaacaaccacataaggaagagagacaccacactctta 45494033  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 3670241 - 3670156
Alignment:
Q  167 ttgttaggtcacgaggggagctagggggccgtccatattgaggctagaacaa-catataaataagagagacaccacactcttaccc 251  Q
    ||||||||||||||||||||||||||  ||||||| || ||||||||||||| |  | ||  ||||||||||||||||||||||||    
T  3670241 ttgttaggtcacgaggggagctagggaaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc 3670156  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 6876852 - 6876924
Alignment:
Q  181 ggggagctaggggg-ccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    |||||||| ||||| ||||||| || |||||||||||||| | | ||| |||||| |||||||||||||||||    
T  6876852 ggggagctcgggggaccgtccacatcgaggctagaacaaccacacaaacaagagaaacaccacactcttaccc 6876924  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 1085593 - 1085678
Alignment:
Q  168 tgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    |||| ||||| ||||||||| |||||| ||||||| || |||||||||||||| | | || |||||||||| ||||||||||||||    
T  1085593 tgttgggtcatgaggggagccagggggaccgtccacatcgaggctagaacaaccacacaagtaagagagacgccacactcttaccc 1085678  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 37106105 - 37106020
Alignment:
Q  168 tgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaaca-tataaataagagagacaccacactcttaccc 251  Q
    |||| |||||| ||||||||| ||||| ||||||| || ||||||||||||||  || ||  ||||||||||||||||||||||||    
T  37106105 tgttgggtcacaaggggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagagagacaccacactcttaccc 37106020  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 42514830 - 42514745
Alignment:
Q  168 tgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaacat-ataaataagagagacaccacactcttaccc 251  Q
    |||| |||||||||||||||| ||||| ||||||| || ||||||||||||||   | || |||||||||| ||||||||||||||    
T  42514830 tgttgggtcacgaggggagctcgggggaccgtccacatcgaggctagaacaaccccacaagtaagagagacgccacactcttaccc 42514745  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 6421907 - 6421827
Alignment:
Q  173 ggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    ||||| |||||||||| ||||| ||||||| || ||||| |||||||| | | || | |||||||||||||||||||||||    
T  6421907 ggtcatgaggggagctcgggggaccgtccacatcgaggccagaacaaccacacaagttagagagacaccacactcttaccc 6421827  T

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Target: scaffold0391 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 1111 - 1168
Alignment:
Q  195 ccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    ||||||| || |||||||||||||| | ||||| ||||||||||||| ||||||||||    
T  1111 ccgtccacatcgaggctagaacaaccacataaacaagagagacaccatactcttaccc 1168  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 2578416 - 2578505
Alignment:
Q  164 atattgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaa-catataaataagagagacaccacactcttaccc 251  Q
    |||||||| ||||| |||||| ||||||||| ||||||| || ||||||||||||| |  | ||  || |||||||||||||||||||||    
T  2578416 atattgttgggtcatgaggggggctagggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttaccc 2578505  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 12071668 - 12071753
Alignment:
Q  168 tgttaggtcacgaggggagct-agggggccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    |||||||||| |||||||||| ||||| |||| || || |||||||||||||| | | || | |||||||| ||||||||||||||    
T  12071668 tgttaggtcatgaggggagcttaggggaccgttcacatcgaggctagaacaaccacacaagtgagagagacgccacactcttaccc 12071753  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 16454756 - 16454704
Alignment:
Q  168 tgttaggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaac 219  Q
    |||| |||||||||||||||| ||||| ||||||| || ||||||||||||||    
T  16454756 tgttgggtcacgaggggagctcgggggaccgtccacatcgaggctagaacaac 16454704  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 37990982 - 37991039
Alignment:
Q  195 ccgtccatattgaggctagaacaac-atataaataagagagacaccacactcttaccc 251  Q
    ||||||| || |||||||||||||| | ||||  ||||||||||||||||||||||||    
T  37990982 ccgtccacatcgaggctagaacaaccacataagcaagagagacaccacactcttaccc 37991039  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 29644884 - 29644964
Alignment:
Q  173 ggtcacgaggggagctaggggg-ccgtccatattgaggctagaacaacat-ataaataagagagacaccacactcttaccc 251  Q
    |||||||||||||||| ||||| ||||||| || ||||||| ||||||   ||||  ||||||||| ||||||||||||||    
T  29644884 ggtcacgaggggagcttgggggaccgtccacatcgaggctaaaacaaccgcataagcaagagagacgccacactcttaccc 29644964  T

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