View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14562_high_3 (Length: 416)
Name: NF14562_high_3
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14562_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 3559224 - 3559610
Alignment:
| Q |
13 |
gagatgaaaaagtttacagtccttgcttcacagaggagactacttcacaattaagatagttcaatttagacaaataatgaatnnnnnnnncaagggatga |
112 |
Q |
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| T |
3559224 |
gagacgaaaaagtttacagtccttgcttcacagaggaaactacttcacaattaagatagttcaatttagacaaataatgaataaagaaa-caagggatga |
3559322 |
T |
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| Q |
113 |
cttttccttgacagctaagttaaaggatgatacctcattattaatatgtcaatcaaggacaggtcttaatatttacgaaacacttctataatgaaaattt |
212 |
Q |
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| T |
3559323 |
cttttccttgacagctaagttaaaggatgatacctcattatcaatatgtcaatcaaggacaggtcttgatatttaagaaacacttctataatgaaaattt |
3559422 |
T |
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| Q |
213 |
atgtaaaagtatactatagtcaacctttcaaaaagaatagtttatcattaagttgcgctgtattcacacaaatattaatcattagaactaggctttggta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3559423 |
atgtaaaagtatactatagtcaacctttcaaaaagaatagtttatcattaagttgcgctgtattcacacaaatattaatcattagaactaggcttttgta |
3559522 |
T |
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| Q |
313 |
ttgttggaaataaatattagacctttgtctgtagtaggtggttgcacaaccacatgcattgttgtaacagtaccaggggtatcacata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3559523 |
ttgttggaaataaatattagacctttgtctgtagtaggtggttgcacaaccacatgcattgttgtaacagtaccaggggtatcacata |
3559610 |
T |
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