View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14562_low_10 (Length: 237)

Name: NF14562_low_10
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14562_low_10
NF14562_low_10
[»] chr5 (6 HSPs)
chr5 (1-222)||(2405954-2406175)
chr5 (52-158)||(27726832-27726938)
chr5 (53-119)||(32050386-32050452)
chr5 (52-119)||(6198608-6198675)
chr5 (53-117)||(13456200-13456264)
chr5 (51-83)||(34384803-34384835)
[»] scaffold0147 (1 HSPs)
scaffold0147 (51-163)||(28331-28443)
[»] chr8 (2 HSPs)
chr8 (145-201)||(35494257-35494313)
chr8 (51-201)||(16441840-16441990)
[»] chr6 (2 HSPs)
chr6 (143-203)||(32439471-32439531)
chr6 (51-119)||(35128756-35128824)
[»] chr7 (2 HSPs)
chr7 (62-172)||(19494383-19494493)
chr7 (51-119)||(47822015-47822083)
[»] chr4 (2 HSPs)
chr4 (53-119)||(30866967-30867033)
chr4 (53-119)||(42862456-42862522)
[»] chr3 (2 HSPs)
chr3 (54-122)||(38602847-38602915)
chr3 (143-203)||(48543269-48543329)
[»] chr1 (4 HSPs)
chr1 (136-204)||(5602678-5602745)
chr1 (143-203)||(19078906-19078966)
chr1 (143-203)||(19126794-19126854)
chr1 (51-119)||(24436500-24436568)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2405954 - 2406175
Alignment:
Q  1 gttgcgtatgttaaattagaggagtcaggagtgctaagaacactcttggaaacactcattcttttattgggtgaaatctatgtgggttccacgctttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2405954 gttgcgtatgttaaattagaggagtcaggagtgctaagaacactcttggaaacactcattcttttattgggtgaaatctatgtgggttccacactttgaa 2406053  T
Q  101 gatggcacccacataaagtagtaggactcatgttcatttcttccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2406054 gatggcacccacataaagtagtaggactcatgttcatttcttccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcct 2406153  T
Q  201 cattaattatgtgtataaaact 222  Q
    ||||||||||||||||||||||    
T  2406154 cattaattatgtgtataaaact 2406175  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 27726832 - 27726938
Alignment:
Q  52 acactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagtagtaggactcatgttcatttcttccaataaga 151  Q
    ||||||| ||||||||||||||||||  |||||||| | || ||||| | ||||  |||||  ||||| || |||| ||||||||||||  | |||||||    
T  27726832 acactcactcttttattgggtgaaattaatgtgggtcctacactttggaaatgggtcccactcaaagtggttggacccatgttcatttcacctaataaga 27726931  T
Q  152 gagtgag 158  Q
    |||||||    
T  27726932 gagtgag 27726938  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 32050452 - 32050386
Alignment:
Q  53 cactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    |||||| | ||||||||||||||||| ||||  ||||||| ||||||| |||| |||||||||||||    
T  32050452 cactcacttttttattgggtgaaatcaatgtatgttccacactttgaaaatggaacccacataaagt 32050386  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 6198675 - 6198608
Alignment:
Q  52 acactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    ||||||| || |||||||||||||||| |||||||| |||| ||||||| ||||   |||||||||||    
T  6198675 acactcactcatttattgggtgaaatcgatgtgggtcccacactttgaaaatgggttccacataaagt 6198608  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 13456200 - 13456264
Alignment:
Q  53 cactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaa 117  Q
    |||||| ||||||||| ||||||||| |||| ||| | || ||||||| |||| |||||||||||    
T  13456200 cactcactcttttattaggtgaaatcaatgtaggtcctacactttgaaaatggaacccacataaa 13456264  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 34384835 - 34384803
Alignment:
Q  51 aacactcattcttttattgggtgaaatctatgt 83  Q
    |||||||||||||||||||||||||||| ||||    
T  34384835 aacactcattcttttattgggtgaaatcaatgt 34384803  T

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Target: scaffold0147 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 28443 - 28331
Alignment:
Q  51 aacactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagtagtaggactcatgttcatttcttccaataag 150  Q
    ||||| || ||| ||||||||||||||| |||||||| |||| ||||||| ||||  |||||||||| |  | |||| ||  || ||||| |||||||||    
T  28443 aacacccactctcttattgggtgaaatcaatgtgggtcccacactttgaaaatgggtcccacataaattgatgggacccacattgatttcatccaataag 28344  T
Q  151 agagtgagtgtta 163  Q
    | |||||||||||    
T  28343 aaagtgagtgtta 28331  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 35494257 - 35494313
Alignment:
Q  145 aataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctc 201  Q
    ||||||||| ||| ||||||||| ||| ||| ||||||||| |||||||||||||||    
T  35494257 aataagagaatgattgttagagtgagtgttgaaaaaagagtcttcctagcactcctc 35494313  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 16441840 - 16441990
Alignment:
Q  51 aacactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagtagtaggactcatgttcatttcttccaataag 150  Q
    |||||||| |||||||||| ||||||||||||| |||||||   || | | ||||  ||||||||| ||  | |||| ||  || ||||| |||| |||     
T  16441840 aacactcactcttttattgagtgaaatctatgtaggttccaaaattcggaaatggatcccacataaggtgatgggacccacattgatttcatccagtaaa 16441939  T
Q  151 agagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctc 201  Q
    ||||||||||||| ||  ||| ||| ||| ||| ||||| |||||||||||    
T  16441940 agagtgagtgttatagatagtgttgaaaagagaatattcttagcactcctc 16441990  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 32439531 - 32439471
Alignment:
Q  143 ccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctcat 203  Q
    ||||||||||||||||||||||||  ||| || |||| ||||| ||| |||||||||||||    
T  32439531 ccaataagagagtgagtgttagagagagtgtttgaaagagagtgttcatagcactcctcat 32439471  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 35128756 - 35128824
Alignment:
Q  51 aacactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    |||||||||| ||||||||||||||||| |||| ||  | || ||||||| |||| |||||||||||||    
T  35128756 aacactcatttttttattgggtgaaatcaatgtaggacctacactttgaaaatggaacccacataaagt 35128824  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 19494383 - 19494493
Alignment:
Q  62 ttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagtagtaggactcatgttcatttcttccaataagagagtgagtgt 161  Q
    ||||||||||||||||| |||| || || || ||||||| |||| ||||||||||||| || ||||  |  || |||||  ||||||| |||||||||      
T  19494383 ttttattgggtgaaatcaatgtaggatctacactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtac 19494482  T
Q  162 tagagtaagta 172  Q
    ||||| |||||    
T  19494483 tagagaaagta 19494493  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 47822015 - 47822083
Alignment:
Q  51 aacactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    |||||||| |||| |||||||||||||| |||||||| |||| | ||| | ||||  ||||||||||||    
T  47822015 aacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagt 47822083  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 30866967 - 30867033
Alignment:
Q  53 cactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    |||||||| ||||||| ||||||| | ||||||| || || ||||||| |||| |||||||||||||    
T  30866967 cactcatttttttattaggtgaaaacaatgtgggatctacactttgaaaatggaacccacataaagt 30867033  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 42862456 - 42862522
Alignment:
Q  53 cactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    |||||| ||||||||||||||||||| || |  ||| ||| ||||||| |||| |||||||||||||    
T  42862456 cactcactcttttattgggtgaaatcaatttatgtttcacactttgaaaatggaacccacataaagt 42862522  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 38602847 - 38602915
Alignment:
Q  54 actcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagtagt 122  Q
    ||||| ||||||||| ||| |||| ||||||||| |||| | ||||| ||||  |||||||||||||||    
T  38602847 actcactcttttattcggtaaaatttatgtgggtaccacacattgaaaatggatcccacataaagtagt 38602915  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 48543269 - 48543329
Alignment:
Q  143 ccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctcat 203  Q
    |||||||||||||||||||| |||  ||| || |||| ||||| ||| |||||||||||||    
T  48543269 ccaataagagagtgagtgttggagagagtgttagaaagagagtgttcatagcactcctcat 48543329  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 5602678 - 5602745
Alignment:
Q  136 atttcttccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctcatt 204  Q
    ||||| |||||||||||||| |||||||||| |||||||  ||||||||| | |||| || ||||||||    
T  5602678 atttcatccaataagagagtaagtgttagagaaagtatt-aaaaaagagtgtccctaacattcctcatt 5602745  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 19078966 - 19078906
Alignment:
Q  143 ccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctcat 203  Q
    ||||||||||||||||||||||||  ||| || |||| ||||| | | |||||||||||||    
T  19078966 ccaataagagagtgagtgttagagagagtgttagaaacagagtgtccatagcactcctcat 19078906  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 19126854 - 19126794
Alignment:
Q  143 ccaataagagagtgagtgttagagtaagtattggaaaaagagtattcctagcactcctcat 203  Q
    ||||||||||||||||||||||||  ||| || |||| ||||| | | |||||||||||||    
T  19126854 ccaataagagagtgagtgttagagagagtgttagaaacagagtgtccatagcactcctcat 19126794  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 24436500 - 24436568
Alignment:
Q  51 aacactcattcttttattgggtgaaatctatgtgggttccacgctttgaagatggcacccacataaagt 119  Q
    |||||||  ||||||||||||||||||| |||| ||  |||| ||||||| || | |||||||||||||    
T  24436500 aacactccctcttttattgggtgaaatcaatgtaggacccacactttgaaaatagaacccacataaagt 24436568  T

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