View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14562_low_11 (Length: 227)
Name: NF14562_low_11
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14562_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 19685415 - 19685195
Alignment:
| Q |
5 |
catagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggatggaggctaaggaagcaaaccctaaacgtagttgaaagatg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
19685415 |
catagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaagatg |
19685316 |
T |
|
| Q |
105 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcctgttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacag |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19685315 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcctcttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacag |
19685216 |
T |
|
| Q |
205 |
taccataaatgtagtcatata |
225 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
19685215 |
taccataaatgtggtcatata |
19685195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 19629236 - 19629456
Alignment:
| Q |
5 |
catagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggatggaggctaaggaagcaaaccctaaacgtagttgaaagatg |
104 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
19629236 |
catagagcacaatgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaagata |
19629335 |
T |
|
| Q |
105 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcctgttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| ||||| |||||| | |
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| T |
19629336 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgattcctcttgtctcttcaaacaagattcatatgtagcatctgtggatgcatccactg |
19629435 |
T |
|
| Q |
205 |
taccataaatgtagtcatata |
225 |
Q |
| |
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||||||||||||||||||||| |
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| T |
19629436 |
taccataaatgtagtcatata |
19629456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 35381437 - 35381217
Alignment:
| Q |
5 |
catagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggatggaggctaaggaagcaaaccctaaacgtagttgaaagatg |
104 |
Q |
| |
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|||| ||||||||||||| ||||||||||||| || |||||||| ||||||||||| |||||||||| |||| ||| |||||||||| |||| ||||| |
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| T |
35381437 |
catatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaattgatagatg |
35381338 |
T |
|
| Q |
105 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcctgttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacag |
204 |
Q |
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||| |||||| ||||||||||||||||| ||||||||||||||||||| | ||||| || | | ||||||||||||||||||| |||| |||| || | |
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| T |
35381337 |
gaactaagtgtagttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggcttcatatgtagcatctgtggatttatctacgg |
35381238 |
T |
|
| Q |
205 |
taccataaatgtagtcatata |
225 |
Q |
| |
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| ||||||||||||||||||| |
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|
| T |
35381237 |
tgccataaatgtagtcatata |
35381217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 35355423 - 35355205
Alignment:
| Q |
5 |
catagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggatggaggctaaggaagcaaaccctaaacgtagttgaaagatg |
104 |
Q |
| |
|
||||||| |||||||||| ||||||||||| | ||||||||||| ||||||||||| |||| |||||||||||||| |||||||| | |||| | || |
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| T |
35355423 |
catagagaacattgtaaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaatt |
35355324 |
T |
|
| Q |
105 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcctgttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacag |
204 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||| || | | | ||||||||||||||||| |||| ||| ||| | |
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| T |
35355323 |
gaatcaagtgtagttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactg |
35355224 |
T |
|
| Q |
205 |
taccataaatgtagtcata |
223 |
Q |
| |
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||||||||||||||||||| |
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| T |
35355223 |
taccataaatgtagtcata |
35355205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 35370870 - 35370652
Alignment:
| Q |
5 |
catagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggatggaggctaaggaagcaaaccctaaacgtagttgaaagatg |
104 |
Q |
| |
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||||||| |||||||||| ||||||||||||| || |||||||| |||||||||||| |||| ||||| |||||||| |||||||||| |||| ||||| |
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| T |
35370870 |
catagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatg |
35370771 |
T |
|
| Q |
105 |
gaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcctgttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacag |
204 |
Q |
| |
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|||| || ||||||||||||||||||||| ||||||||||||||||||| | ||||| || | | | ||||||| || |||||| |||| |||| || | |
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| T |
35370770 |
gaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatataacatctgtggatttatctaccg |
35370671 |
T |
|
| Q |
205 |
taccataaatgtagtcata |
223 |
Q |
| |
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||||||||||||||||||| |
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| T |
35370670 |
taccataaatgtagtcata |
35370652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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