View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14562_low_2 (Length: 462)
Name: NF14562_low_2
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14562_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 19469737 - 19470125
Alignment:
| Q |
1 |
tgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgattttggtcaaggactgc |
100 |
Q |
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| T |
19469737 |
tgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatgattttggtcaaggactgc |
19469836 |
T |
|
| Q |
101 |
tgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatctagggaatattattaga |
200 |
Q |
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| T |
19469837 |
tgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatctagagaatattattaga |
19469936 |
T |
|
| Q |
201 |
tgttttcacgttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttca |
300 |
Q |
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| T |
19469937 |
tgttttcaggttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttca |
19470036 |
T |
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| Q |
301 |
ggttcctgataggatttggtgggaggaagtacttgaatccattaatttgtattgtgactattcctttatttaatctgtagtttttgttt |
389 |
Q |
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| T |
19470037 |
ggttcctgataggatttggttagaggaagtacttgaatccattaatttgtattgtgacaattcctttatttaatctgtagtttttgttt |
19470125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 19470145 - 19470187
Alignment:
| Q |
407 |
ccattttgtttcttatttttgtttcaaaacaatgtcatatatg |
449 |
Q |
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| T |
19470145 |
ccattttgtttcttatttttgttttaaaacaatgtcatatatg |
19470187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 47865581 - 47865355
Alignment:
| Q |
1 |
tgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgattttggtcaaggactgc |
100 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47865581 |
tgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgattttggtcaaggactgc |
47865482 |
T |
|
| Q |
101 |
tgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatctagggaatattattaga |
200 |
Q |
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| T |
47865481 |
tgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatctagggaatattattaga |
47865382 |
T |
|
| Q |
201 |
tgttttcacgttaagtaaaacttttaa |
227 |
Q |
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| T |
47865381 |
tgttttcacgttaagtaaaacttttaa |
47865355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 219 - 449
Target Start/End: Complemental strand, 47864488 - 47864264
Alignment:
| Q |
219 |
aacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
318 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
47864389 |
T |
|
| Q |
319 |
gtgggaggaagtacttgaatccattaatttgtattgtgactattcctttatttaatctgtagtttttgtttcgnnnnnnnnnnnnnnnccattttgtttc |
418 |
Q |
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| T |
47864388 |
gttggaggaagtgcttgaatccattaatttgtattgtgacaattcctttatttaatctgtagtttttgtttc------aaaaaaaaaatcattttgtttc |
47864295 |
T |
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| Q |
419 |
ttatttttgtttcaaaacaatgtcatatatg |
449 |
Q |
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| T |
47864294 |
ttatttttgtttcaaaacaatgtcatatatg |
47864264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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