View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14562_low_4 (Length: 365)
Name: NF14562_low_4
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14562_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 43742478 - 43742148
Alignment:
| Q |
1 |
ctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattgggttgggttgaaatcatatgtagaaaatcttaggcaatt |
100 |
Q |
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| T |
43742478 |
ctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattggattgggttgaaatcatatgtagaaaatcttaggcaatt |
43742379 |
T |
|
| Q |
101 |
aatgaggaaaatcaaaatatgaccataaattagtctaaatttccagttttcatgacatnnnnnnngatgtagaggaattggcgtttaagatcggaagaca |
200 |
Q |
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| T |
43742378 |
aatgaggaaaatcaaaatatgaccataaattagtctaaatttccagttttcatgacatgaaaaaagatgtagaggaattggcgtttaagatcggaagaca |
43742279 |
T |
|
| Q |
201 |
atgacttagtgggaaaggattagaaaataagggaagagaaagagactgcttgttcaaaccagttaatgagagggaattccacaaattacacaaattaata |
300 |
Q |
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| T |
43742278 |
atgacttagtgggaaaggattagaaaataagggaagagaaagagactgcttgttcaaaccagtaaatgagagggaattc---------cacaaattaata |
43742188 |
T |
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| Q |
301 |
agtactcctcacaatacaatgttagaagttagaaccaaga |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43742187 |
agtactcctcacaatacaatgttagaagttagaaccaaga |
43742148 |
T |
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