View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14562_low_5 (Length: 321)

Name: NF14562_low_5
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14562_low_5
NF14562_low_5
[»] chr1 (1 HSPs)
chr1 (12-306)||(30845274-30845568)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 30845568 - 30845274
Alignment:
Q  12 cacagatacagacttcagtaacagaggaagcataaaagaaccaagcacagaacttaaattaacaaatgttgaaaaatgcacctattatttactgtgatga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30845568 cacagatacagacttcagtaacagaggaagcataaaagaaccaagcacagaactcaaattaacaaatgttgaaaaatgcacctattatttactgtgatga 30845469  T
Q  112 acgaatcagtctctctaagctatgaataactgaagggtatataggaatagagtgcatggctagcattactttcattgtatgctgcttgtttagattatga 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30845468 acgaatcagtctccctaagctatgaataactgaagggtatataggaatagagtgcatggctagcattactttcattgtatgctgcttgtttagattatga 30845369  T
Q  212 attgatataagaactcggtagtattggttgtaggtgtagatatcagaacttagctactgaagtaaattttggctggtgttattgtacaagaaatt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30845368 attgatataagaactcggtagtattggttgtaggtgtagatatcggaacttagctgctgaagtaaattttggctggtgttattgtacaagaaatt 30845274  T

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