View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14562_low_7 (Length: 276)

Name: NF14562_low_7
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14562_low_7
NF14562_low_7
[»] chr8 (10 HSPs)
chr8 (15-276)||(2050199-2050460)
chr8 (17-139)||(2057164-2057286)
chr8 (18-176)||(2032961-2033120)
chr8 (23-149)||(10767605-10767731)
chr8 (42-176)||(2028449-2028583)
chr8 (42-151)||(1950435-1950544)
chr8 (21-153)||(2054211-2054346)
chr8 (15-127)||(2046390-2046505)
chr8 (15-127)||(2037013-2037128)
chr8 (30-67)||(2022290-2022327)
[»] chr4 (1 HSPs)
chr4 (63-153)||(48908694-48908784)
[»] chr2 (4 HSPs)
chr2 (36-127)||(28786134-28786225)
chr2 (30-89)||(28736617-28736676)
chr2 (30-147)||(28743185-28743302)
chr2 (30-89)||(28713343-28713402)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 2050199 - 2050460
Alignment:
Q  15 atgaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2050199 atgaatagatcctttgtttataatagtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttggctcctgatactc 2050298  T
Q  115 ccaaaccagaagattttcccgcagtgtgcaggtatgtttcaatgcatgtgtataaaatttatcttatggcaccgacacttcaattaaaggagagtccggt 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2050299 ccaaaccagaagattttcccgcagtgtgcaggtatgtttcaaagcatgtgtataaaatttatcttatggcaccgacacttcaattaaaggtgagtccggt 2050398  T
Q  215 gtctgacatgttataattttttatactatattttcaaattattaatggcgttcacttatcat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2050399 gtctgacatgttataattttttatactatattttcaaattattaatggcgttcacttatcat 2050460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 2057164 - 2057286
Alignment:
Q  17 gaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactccc 116  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||   |||||||||||||||||||||||     
T  2057164 gaatagatcctttgtttacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcctgatactcca 2057263  T
Q  117 aaaccagaagattttcccgcagt 139  Q
    |||||||||||||||||||||||    
T  2057264 aaaccagaagattttcccgcagt 2057286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 2032961 - 2033120
Alignment:
Q  18 aatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactc 114  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||   ||||||||||    
T  2032961 aatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactc 2033060  T
Q  115 ccaaaccagaagattttcccgcagtgtgcaggtatgtttcaatgcatgtgtataaaatttat 176  Q
     ||||||| |||| ||||| |  || |||||||||||||  |||||| ||| ||||||||||    
T  2033061 tcaaaccacaagagtttcctgtggtatgcaggtatgttt--atgcatatgtgtaaaatttat 2033120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 10767605 - 10767731
Alignment:
Q  23 atcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaacca 122  Q
    ||||||| |||| |||||||| |||||||||||||| || |||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  10767605 atcctttatttacaatagtaactttgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggctcctgatactcccaaacca 10767704  T
Q  123 gaagattttcccgcagtgtgcaggtat 149  Q
    |||||| |||| | ||| |||||||||    
T  10767705 gaagatattcctgtagtatgcaggtat 10767731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 2028449 - 2028583
Alignment:
Q  42 aattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgt 141  Q
    ||||||||| | ||||| || |||||||||||||||||||||| || | | |||| |||||||||||||||||||||||||||||||||||| |  || |    
T  2028449 aattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccagaagattttcctgttgtat 2028548  T
Q  142 gcaggtatgtttcaatgcatgtgtataaaatttat 176  Q
    ||||||||||||  |||||||  |||| |||||||    
T  2028549 gcaggtatgtttgtatgcatgcatatacaatttat 2028583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 1950544 - 1950435
Alignment:
Q  42 aattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgt 141  Q
    ||||||||| | ||||| || |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |||||||||| |  || |    
T  1950544 aattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggctcctgatactcccaaaccacaagattttcctgttgtat 1950445  T
Q  142 gcaggtatgt 151  Q
    ||||||||||    
T  1950444 gcaggtatgt 1950435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 2054211 - 2054346
Alignment:
Q  21 agatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactccca 117  Q
    ||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||  ||| ||||||||   |||||||||| ||    
T  2054211 agatcctttatttacaatagcaatgttgatatttatagctctccagcactcaattggaaggatagttttggttgtaacttggctccacctgatactctca 2054310  T
Q  118 aaccagaagattttcccgcagtgtgcaggtatgttt 153  Q
    |||||||||| ||||| |  || |||||||||||||    
T  2054311 aaccagaagagtttcctgtggtatgcaggtatgttt 2054346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 2046390 - 2046505
Alignment:
Q  15 atgaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgata 111  Q
    ||||||||||| ||| |||| ||||| |||| ||||||||||||  | ||||||||||||||||| |||| |||||| ||||||||||||   |||||||    
T  2046390 atgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgata 2046489  T
Q  112 ctcccaaaccagaaga 127  Q
    ||| ||||||||||||    
T  2046490 ctctcaaaccagaaga 2046505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 2037013 - 2037128
Alignment:
Q  15 atgaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgata 111  Q
    ||||||||||| ||| |||| ||||| |||| ||||||||||||  | ||||||||||||||||| |||| |||||| ||||||||||||   |||||||    
T  2037013 atgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgata 2037112  T
Q  112 ctcccaaaccagaaga 127  Q
    |||  |||||||||||    
T  2037113 ctcttaaaccagaaga 2037128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 2022290 - 2022327
Alignment:
Q  30 gtttataatagtaattttgatatttatagttctccagc 67  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  2022290 gtttataatagtaattttgatctttatagttcaccagc 2022327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 48908784 - 48908694
Alignment:
Q  63 ccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgtgcaggtatgttt 153  Q
    ||||| |||||||||||||||| ||||   |||| ||||||||||||||||||||||||||||||||||||   ||| |||||||||||||    
T  48908784 ccagcgctcaattggagggatacttttatttgtttcttggctcctgatactcccaaaccagaagattttcctctagtatgcaggtatgttt 48908694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 28786225 - 28786134
Alignment:
Q  36 aatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaaga 127  Q
    ||||| |||||| || ||||||||||  ||||||||||||||||||||| ||||| ||||| |||||||||| || |||| |||||| ||||    
T  28786225 aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 28786134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 28736676 - 28736617
Alignment:
Q  30 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagtttt 89  Q
    ||||||||||||||||||||| | |||||||| |||||||| ||||||||||||| ||||    
T  28736676 gtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatactttt 28736617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 28743302 - 28743185
Alignment:
Q  30 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagatt 129  Q
    ||||||||||||||||||||| | |||||||| ||||| || ||||||||||||| ||| || |   |  |||||||| || |||| |||||||||||||    
T  28743302 gtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatactttggcattgaagatggctcctaatgctccaaaaccagaagatt 28743203  T
Q  130 ttcccgcagtgtgcaggt 147  Q
    | || | ||| |||||||    
T  28743202 tgccagtagtatgcaggt 28743185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 28713402 - 28713343
Alignment:
Q  30 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagtttt 89  Q
    ||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||| ||||    
T  28713402 gtttataatagcaattttgatttgtatagatcaccagcacttaattggagggatactttt 28713343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University