View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14562_low_8 (Length: 270)

Name: NF14562_low_8
Description: NF14562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14562_low_8
NF14562_low_8
[»] chr7 (1 HSPs)
chr7 (7-144)||(44961877-44962015)
[»] chr2 (1 HSPs)
chr2 (32-181)||(43779407-43779556)
[»] chr8 (2 HSPs)
chr8 (32-141)||(42351734-42351843)
chr8 (35-160)||(25843023-25843148)
[»] chr1 (3 HSPs)
chr1 (32-135)||(8382284-8382387)
chr1 (35-146)||(7608544-7608654)
chr1 (84-132)||(31834875-31834926)
[»] chr5 (3 HSPs)
chr5 (60-141)||(19030579-19030660)
chr5 (56-146)||(35868429-35868519)
chr5 (100-181)||(29374543-29374625)
[»] chr4 (1 HSPs)
chr4 (56-181)||(34934118-34934243)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 44962015 - 44961877
Alignment:
Q  7 atagcttccaaattcaaaaactagactatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagct 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44962015 atagcttccaaattcaaaaactagattatgtttggctgtgcggtggcattttccacatcaagcgaaaattatagtaggaactcacgtttgcaatgaagct 44961916  T
Q  107 acatatagtagt-ttttcaaatcacggcaatttttgtct 144  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  44961915 acatatagtagttttttcaaatcacggcaatttttgtct 44961877  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 43779556 - 43779407
Alignment:
Q  32 ctatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcac 130  Q
    |||||||||||||||| ||| ||||| ||||||||| ||||||| |  | ||||||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  43779556 ctatgtttggctgtgcagtgccattt-ccacatcaaaccaaaatcacggcaggaactcacgtttgcagtgaagctacatatagtagcctttccaaatcac 43779458  T
Q  131 ggcaatttttgtcttgagatgtaagaaaacttattccatcgcacattcaaa 181  Q
    | ||||||||| |||| || | |||||||||| ||||||||||||| ||||    
T  43779457 gacaatttttgccttgggacgcaagaaaacttgttccatcgcacatccaaa 43779407  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 42351843 - 42351734
Alignment:
Q  32 ctatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcac 130  Q
    |||||||||| ||||||||  ||||||| ||||||||||||||| |  | ||||| ||||||||||| |||||||||||||||| | |||||||||||||    
T  42351843 ctatgtttggttgtgcggtaccattttc-acatcaagccaaaatcacggcaggaattcacgtttgcagtgaagctacatatagttgctttttcaaatcac 42351745  T
Q  131 ggcaatttttg 141  Q
    |||||||||||    
T  42351744 ggcaatttttg 42351734  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 25843023 - 25843148
Alignment:
Q  35 tgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagtttttc-aaatcacggc 133  Q
    |||||||||||| ||||  |||| ||||||||| ||||||| | || |||   ||||||||| | |||||||||| || ||||  |||| ||||||||||    
T  25843023 tgtttggctgtgtggtgtaattt-ccacatcaaaccaaaatcacagcaggtggtcacgtttgtagtgaagctacacatggtagcgtttccaaatcacggc 25843121  T
Q  134 aatttttgtcttgagatgtaagaaaac 160  Q
    |||||||| |||| |||| ||||||||    
T  25843122 aatttttgccttgggatgcaagaaaac 25843148  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 8382387 - 8382284
Alignment:
Q  32 ctatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcac 130  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |  | ||||||||||||||||| ||||||||| |||||||| |||| | ||||||    
T  8382387 ctatgtttggctgtgcggtgccattt-ccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtagcttttccgaatcac 8382289  T
Q  131 ggcaa 135  Q
    |||||    
T  8382288 ggcaa 8382284  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 7608654 - 7608544
Alignment:
Q  35 tgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcacggc 133  Q
    ||||||| ||||||||  ||||||| |||||||| |||||| |  ||| |||| |||||||||  |||||||||||||||||| |||| ||||||||  |    
T  7608654 tgtttggttgtgcggtaccattttc-acatcaaggcaaaatcacggtaagaac-cacgtttgctgtgaagctacatatagtagcttttccaaatcacatc 7608557  T
Q  134 aatttttgtcttg 146  Q
    |||||||| ||||    
T  7608556 aatttttgccttg 7608544  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 31834926 - 31834875
Alignment:
Q  84 gaactcacgtttgcaatgaagctaca--tatagtag-tttttcaaatcacgg 132  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||||||    
T  31834926 gaactcacgtttccaatgaagctacatatatagtagctttttcaaatcacgg 31834875  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 19030579 - 19030660
Alignment:
Q  60 cacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcacggcaatttttg 141  Q
    ||||||||| |||||| |  | |||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||    
T  19030579 cacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctacatatagtagctttttcaaatcacggcaatttttg 19030660  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 35868429 - 35868519
Alignment:
Q  56 tttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagtttttc-aaatcacggcaatttttgtcttg 146  Q
    ||||||||||||| |||||| |  | |||||| ||||||| || |||||||||||||| ||| ||||| |||||||||||||||||| ||||    
T  35868429 tttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctacatataatagcttttccaaatcacggcaatttttgccttg 35868519  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 29374625 - 29374543
Alignment:
Q  100 tgaagctacatatagtagtttttc-aaatcacggcaatttttgtcttgagatgtaagaaaacttattccatcgcacattcaaa 181  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| |||| ||||  ||||| ||  ||||| ||||||| ||||    
T  29374625 tgaagttacatatagtagcttttccaaatcacggcaatttttgccttgggatgcgagaaagctgcttccaccgcacatccaaa 29374543  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 34934118 - 34934243
Alignment:
Q  56 tttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcacggcaatttttgtcttgagatgtaa 154  Q
    |||||||||||||| ||||| |   ||||||| |||||||||| |||| ||||||||||||| |||| ||||| || ||||||||||  ||| || |  |    
T  34934118 tttccacatcaagcaaaaatcacgctaggaac-cacgtttgcagtgaaactacatatagtagcttttccaaataactgcaatttttgctttgggacgcga 34934216  T
Q  155 gaaaacttattccatcgcacattcaaa 181  Q
    |||||||||||||| ||||||| ||||    
T  34934217 gaaaacttattccaccgcacatccaaa 34934243  T

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