View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_high_12 (Length: 239)
Name: NF14563_high_12
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 39396353 - 39396591
Alignment:
| Q |
2 |
agcaaaggcaaatgtcctacagtgggcnnnnnnntgcgcccacaaagatacaaagaaaacctctcatacatacacaataaacaccaaatgtgctgcacaa |
101 |
Q |
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|||||| ||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39396353 |
agcaaaagcaaatgtcttacagtggccaaaaaaatgcgcccacaaagatacaaagaaaacccctcatacatacacaataaacaccaaatgtgctgcacaa |
39396452 |
T |
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| Q |
102 |
aaaaccacccattacacagcctacagtcagcacact-aaacctgccaacacatcacaacatccattacacagcctacaattagcaccaacagcaaagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39396453 |
aaaaccacccattacacagcctacagtcagcacactcaaacctgccaacacatcacaacatccataacacagcctacaattagcaccaacagcaaagcca |
39396552 |
T |
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| Q |
201 |
cacagcttagccgaagctcctccacccctttgttcactt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39396553 |
cacagcttagccgaagctcctccacccctttgttcactt |
39396591 |
T |
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