View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_high_14 (Length: 236)
Name: NF14563_high_14
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 14277282 - 14277107
Alignment:
| Q |
1 |
tgtttattgtttagttcagaattgagcaatattgtgaagcataaaatgttgaaaagcaaaatatgatgtagagaaagaaacaggaaacaccattattttt |
100 |
Q |
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| T |
14277282 |
tgtttattgtttagttcagaattgagcaatattgtgaagcataaaatgttgaaaagtaaaatatgatgtagagaaagaaacaggaaacaccattattttt |
14277183 |
T |
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| Q |
101 |
gaaaacaccaaaataaacggtagtagttttctacgcaatggtactgatcaagaatttatgatagtaacatgcatta |
176 |
Q |
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| T |
14277182 |
ggaaacaccaaaataaacggtagtagttttctacgcaatggtactgatcaagaatttatcttagtaacatgcatta |
14277107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 14315560 - 14315391
Alignment:
| Q |
8 |
tgtttagttcagaattgagcaatattgtgaagcataaaatgttgaaaagcaaaatatgatgtagagaaagaaacaggaaacaccattatttttgaaaaca |
107 |
Q |
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| T |
14315560 |
tgtttagttcagaattgagcaatattgtgaagcatgaaatgttgaaaagtaaaatatgatgtagagatagaaacaggaaacaccattatttttggaaaca |
14315461 |
T |
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| Q |
108 |
ccaaa-ataaacggtagtagttttctacgcaatggtactgatcaagaatttatgatagtaacatgcatta |
176 |
Q |
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| T |
14315460 |
ccaaatgtaaacggtagtagttttctacgcaatggtactgatcaagaatttctcatagtaacatgcatta |
14315391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 14298873 - 14298705
Alignment:
| Q |
8 |
tgtttagttcagaattgagcaatattgtgaagcataaaatgttgaaaagcaaaatatgatgtagagaaagaaacaggaaacaccattatttttgaaaaca |
107 |
Q |
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| T |
14298873 |
tgtttagttcagaattgag-aatattgtgaagcatgaattgttgaaaagtaaaatatgatgtagagatagaaacaggaaataccattatttttggaaaca |
14298775 |
T |
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| Q |
108 |
ccaaaa-taaacggtagtagttttctacgcaatggtactgatcaagaatttatgatagtaacatgcatta |
176 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
14298774 |
ccaaaagtaaacggtagtagttttctacgcaatggtactgatcaagaatttctcatagtaacatgcatta |
14298705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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