View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_high_2 (Length: 611)
Name: NF14563_high_2
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 606
Target Start/End: Original strand, 49654201 - 49654787
Alignment:
| Q |
20 |
taaaggactccaacaaagctaaaaacaacaataagagtgaacnnnnnnnccaagaaactcagcaaaagaaagaccattgttctgcaaatactgaatccaa |
119 |
Q |
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| T |
49654201 |
taaaggactccaacaaagctaaaaacaacaataagagtgaacaaaaaaaccaagaaactcagcaaaagaaagaccattgttctgcaaatactgaatccaa |
49654300 |
T |
|
| Q |
120 |
cctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaaccagtgctggctcaccggagaaa |
219 |
Q |
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| T |
49654301 |
cctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaaccagtgctggctcaccggagaaa |
49654400 |
T |
|
| Q |
220 |
tctccggctggtggtaaggggcaggaaacaaagaacaggagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654401 |
tctccggctggtggtaaggggcaggaaacaaagaacaagagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaa |
49654500 |
T |
|
| Q |
320 |
ctggaagcaatgggttgagttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcag |
419 |
Q |
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| T |
49654501 |
ctggaagcaatgggttgagttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcag |
49654600 |
T |
|
| Q |
420 |
ccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatg |
519 |
Q |
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| T |
49654601 |
ccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatg |
49654700 |
T |
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| Q |
520 |
ggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
606 |
Q |
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| T |
49654701 |
ggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
49654787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 435 - 606
Target Start/End: Original strand, 16486263 - 16486434
Alignment:
| Q |
435 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
534 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
535 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
606 |
Q |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
16486434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 435 - 606
Target Start/End: Complemental strand, 21816647 - 21816476
Alignment:
| Q |
435 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
534 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
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| Q |
535 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
606 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
21816476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
406 |
caagtgaatctcagccctacacgtcagcaatc |
437 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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