View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14563_high_3 (Length: 392)
Name: NF14563_high_3
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 34616236 - 34616593
Alignment:
| Q |
17 |
cagagacagagaatccatcctatgaatgtggaaacaaaaccacaccctaggacaccattagtacctccaggttcctctagatcagaaaaggttatccatg |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34616236 |
cagagacagagaatccaccctatgaatgtggaaacaaaaccacaccctaggacaccattagtacctccaggttcctctagatcagaaaaggttatccatg |
34616335 |
T |
|
| Q |
117 |
tgcctcctccaatgctgcatcaacatgctatgccagcaataaactcttcaaaaccaaaaagaagctgtttttgcaagtgtatatgttggacgataagctt |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34616336 |
tgcctcctccaatactgcatcaacatgctatgccagcaataaactcttcaaagccaaaaataagctgtttttgcaagtgtatatgttggacaataagctt |
34616435 |
T |
|
| Q |
217 |
gttattccttcttctcattatcattgcagcaactgcaggagccctttacctcatcttcaaaccaaagcttcccaattactcagttgatacactgaggata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34616436 |
gttattccttcttctcattatcattgcagcaactgcaggagccctttacctcatcttcaaaccaaagcttcccaattactcagttgatacactgaggata |
34616535 |
T |
|
| Q |
317 |
agtgatctgagacttaactttgacttgagtctgtatgcaaagtttgatgtgaagatca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34616536 |
agtgatctgagacttaactttgacttgagtctgtatgcaaagtttgatgtgaagatca |
34616593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 2461904 - 2461955
Alignment:
| Q |
131 |
ctgcatcaacatgctatgccagcaataaactcttcaaaaccaaaaagaagct |
182 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
2461904 |
ctgcatcaacatgctataccagaaataaactattcacaaccaaagagaagct |
2461955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University