View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_high_4 (Length: 376)
Name: NF14563_high_4
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_4 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 38155701 - 38155522
Alignment:
| Q |
179 |
atgagttaatgacttttattgtataaaagtgtgtgtgctactgataaataggcatcacattacctcttcaagaatatcactatagaagtgtgtatgctac |
278 |
Q |
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| T |
38155701 |
atgagttaatgacttttattgtataaaagtgtgtatgctactgataaataggcatgacattacctcttcaaaattatcactatagaagtgtgtatgctac |
38155602 |
T |
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| Q |
279 |
tgccttacatttctaaagtttgtcttcactttcaagatggttgcagagaaatttgttgttgatttgaataagccccttgt |
358 |
Q |
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| T |
38155601 |
tgccttacatttctaaagtttgtcttcactttcaagatggttgcagagaaatttgttgttgatttgaataagccccttgt |
38155522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 38164612 - 38164569
Alignment:
| Q |
315 |
atggttgcagagaaatttgttgttgatttgaataagccccttgt |
358 |
Q |
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| T |
38164612 |
atggttgcaaacaaatttgttgttgatttgaataaaccccttgt |
38164569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 12807884 - 12807722
Alignment:
| Q |
16 |
aatatgaatgaagtgatgaagtagtgggaacaaatgaattgaaatcgtacagctacnnnnnnnnnnnnnngtgaaagtcatgatttactaatttaccaaa |
115 |
Q |
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| T |
12807884 |
aatatgaatgaagtgatgaagtagtgggaacaaatgaattgaaatagtacaactacatatatataaag--gtgaaaggcatgatttactaatttaccaaa |
12807787 |
T |
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| Q |
116 |
ataccctcctaagggcaaaatagtcnnnnnnncagacaacaattgttctatatagttaagtagat |
180 |
Q |
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| T |
12807786 |
ataccctcctaagggcaaaatagtcaaaaaaacagacaacaattgttctatatagttaagtagat |
12807722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 5309 - 5152
Alignment:
| Q |
16 |
aatatgaatgaagtgatgaagtagtgggaacaaatgaattgaaatcgtacagctacnnnnnnnnnnnnnngtgaaagtcatgatttactaatttaccaaa |
115 |
Q |
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| T |
5309 |
aatatgaatgaagtgatgaagtagtgggaacaaatgaattgaaatcgtacaactacatatatatatataggtgaaaggcatgatttactaatttaccaaa |
5210 |
T |
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| Q |
116 |
ataccctcctaagggcaaaatagtcnnnnnnncagacaacaattgttctatatagtta |
173 |
Q |
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| T |
5209 |
atacccttctaagggcaaaatagtcaaaaaaacagacaacaattgttctatatagtta |
5152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 2634700 - 2634857
Alignment:
| Q |
16 |
aatatgaatgaagtgatgaagtagtgggaacaaatgaattgaaatcgtacagctacnnnnnnnnnnnnnngtgaaagtcatgatttactaatttaccaaa |
115 |
Q |
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| T |
2634700 |
aatatgaatgaagtgatgaagtagtgggaacaaatgaattgaaatcgtacaactacatatatatatataggtgaaaggcatgatttactaatttaccaaa |
2634799 |
T |
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| Q |
116 |
ataccctcctaagggcaaaatagtcnnnnnnncagacaacaattgttctatatagtta |
173 |
Q |
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| T |
2634800 |
atacccttctaagggcaaaatagtcaaaaaaacagacaacaattgttctatatagtta |
2634857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 27015390 - 27015428
Alignment:
| Q |
98 |
atttactaatttaccaaaataccctcctaagggcaaaat |
136 |
Q |
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| T |
27015390 |
atttactaatttaccaaaatacccccataagggcaaaat |
27015428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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