View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_high_6 (Length: 319)
Name: NF14563_high_6
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 41135143 - 41135423
Alignment:
| Q |
19 |
gtatattttttatacgtacccaaaaccttacaagacatatagcataatcacaaaaacaacattcctttagaaaacatcaattctaccccacaatatatat |
118 |
Q |
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| T |
41135143 |
gtatattttttatacgtacccaaaaccttacaagacatatagcataatcacaaaaacaacattcctttagaaaacatcaattctaccccacaatatatat |
41135242 |
T |
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| Q |
119 |
gtacaattttagtgtctatgtaggagaacaatgtgcttcaactaataactaatgcatttggatttccacccttagtttgtaagttggttacactcaaatt |
218 |
Q |
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| T |
41135243 |
gtacaattttagtgtctatgtaggagaacaatgtgcttcaactaataactaatgcatttggatttcca-ccttagtttgtaagttggttacactcaaatt |
41135341 |
T |
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| Q |
219 |
tgggaccacttgattaacaccacccaaattctcaatctcctcagcttgatacgtagagtgaacaccataaagcacataaaac |
300 |
Q |
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| T |
41135342 |
tgggaccacttgattaacaccacccaaattctcaatctcctcagcttgatacgtagagtgaacaccataaagcacataaaac |
41135423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 28886121 - 28886151
Alignment:
| Q |
1 |
taattagggacggaggtagtatattttttat |
31 |
Q |
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| T |
28886121 |
taattagggacggaggtagtatattttttat |
28886151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7940472 - 7940444
Alignment:
| Q |
1 |
taattagggacggaggtagtatatttttt |
29 |
Q |
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| T |
7940472 |
taattagggacggaggtagtatatttttt |
7940444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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