View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14563_high_7 (Length: 303)
Name: NF14563_high_7
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 14291950 - 14292159
Alignment:
| Q |
24 |
gaattcctccacaacatgttgccaaaagattataatctaaatctatgaagaagtatggaaaacccatccacaacatgcattctgttaacattcgttgctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291950 |
gaattcctccacaacatgttgccaaaagattataatctaaatctatgaagaagtatgggaaacccatccacaacatgcattctgttaacattcgttgctt |
14292049 |
T |
|
| Q |
124 |
ttccgttgatcttgaatatgccttttttcccgtaaaccagaactatgtcttcgaacttacagaaattttgtttgatgtaatgctggtgagcagtgccgga |
223 |
Q |
| |
|
|||||||||||||||||||| |||| || | |||||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
14292050 |
ttccgttgatcttgaatatgtctttgttgctgtaaaccagaactatgtcgtcgaacttatagaaattttgtttgatgtaacgccggtgagcggtgccgga |
14292149 |
T |
|
| Q |
224 |
gaggtcgccg |
233 |
Q |
| |
|
|||||||||| |
|
|
| T |
14292150 |
gaggtcgccg |
14292159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 14292701 - 14292746
Alignment:
| Q |
256 |
taaaatatttgagcgtgggacaataatgagttactatgtttttgtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14292701 |
taaaatatttgagcgtgggacaataatgagttgctatgtttttgtt |
14292746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 14292172 - 14292202
Alignment:
| Q |
233 |
gaggaagaaagaagtttggatcttaaaatat |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14292172 |
gaggaagaaagaagtttggatcttaaaatat |
14292202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 23879623 - 23879531
Alignment:
| Q |
24 |
gaattcctccacaacatgttgccaaaagattataatctaaatctatgaagaagtatggaaaacccatccacaacatgcattctgttaacattc |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23879623 |
gaattcctccacaacatgttgccaaaatattataatctaaatctatgaagaagtatggaaaacccatccacaacatgcattctgttaacattc |
23879531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University