View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14563_low_1 (Length: 756)
Name: NF14563_low_1
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Complemental strand, 53514984 - 53514261
Alignment:
| Q |
18 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514984 |
aagcataggctaggctcatggaaaattaaattatatgacaatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
53514885 |
T |
|
| Q |
118 |
aaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatcttaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53514884 |
aaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgagtggagatctttctttttatattttttttaaatgagagagatcttaaa |
53514785 |
T |
|
| Q |
218 |
ctgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514784 |
ctgttggaatctatattgtatta----aaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
53514689 |
T |
|
| Q |
318 |
ttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgnnnnnnnngtattggttccaataattg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53514688 |
ttcatggcaagatcacttgttgtcgatggcgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgttttttttgtattggttccaataattg |
53514589 |
T |
|
| Q |
418 |
tagatcattttctttttcatgtacattttcttgagaaatgtgtccagtggtaatgcattacttttgatatatcccctgcctgtgtagctctcgaactagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514588 |
tagatcattttctttttcatgtacattttcttgagaaatgtgtccagtggtaatgcat-acttttgatatatcccctgcctgtgtagctctcgaactagt |
53514490 |
T |
|
| Q |
518 |
tcaggaatgtttctggatagaggaaaggacaaaattgtccagaatattgaacggagaattgctgatattacctccataccaataggtatgagtatttgtg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53514489 |
tcaggaatgtttctggatagaggaaaggacaaaattgtccagaatattgaacggagaattgctgatattacctccgtaccaataggtatgagtatttgtg |
53514390 |
T |
|
| Q |
618 |
tgatatctatgtctacctgtttgcctctttctcttc---nnnnnnnnnnngttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514389 |
tgatatctatgtctacctgtttgcctctttctcttcattttttttctcttgttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgc |
53514290 |
T |
|
| Q |
715 |
acatatacttaagtcttaggaccttagtg |
743 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
53514289 |
acatatacttatgtcttaggaccttagtg |
53514261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 53511283 - 53510938
Alignment:
| Q |
18 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
53511283 |
aagcataggctagggtcatggaaaattaaactatacaaagatagaggtttttcatggtagttaatgataaaagaaaatctagtattcatattcatacatg |
53511184 |
T |
|
| Q |
118 |
aaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatcttaaa |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
53511183 |
gaatattcagattgcaggaaacttgaactttctgaaagactccagagtttgagtggagatcttagtttt------------aaatgagagagatcttaaa |
53511096 |
T |
|
| Q |
218 |
ctgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
317 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53511095 |
ctgttggaatttatattgtat----taaaatgtccacttttcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
53511000 |
T |
|
| Q |
318 |
ttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgc |
379 |
Q |
| |
|
|||||| ||||||| |||||||| ||||| | |||||| ||| || ||||||||||||||| |
|
|
| T |
53510999 |
ttcatgacaagatcgcttgttgttgatggcttgactggaaagggtagagaaagcaggtttgc |
53510938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 430 - 742
Target Start/End: Complemental strand, 53510929 - 53510612
Alignment:
| Q |
430 |
tttttcatgtacattttcttgaga-aat-gtgtcc-agtggtaatgcattacttttgatatatcccctgcctgtgtagctctcgaactagttcaggaatg |
526 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| | |
|
|
| T |
53510929 |
tttttcatgtacattttcttgagagaatagtgtcttagtggtaatgcattacttttaatatatcccctgcatgt--agcgctcgaactagttcaggaagg |
53510832 |
T |
|
| Q |
527 |
tttctggatagaggaaaggacaaaattgtccagaatattgaacggagaattgctgatattacctccataccaataggtatgag-tatttgtgtgatatct |
625 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
53510831 |
tttctggagagaggaaaggacaaaattgtccagaatattgaacagagaattgctgatattacctccataccagtaggtatgagttttttgtgtgatatct |
53510732 |
T |
|
| Q |
626 |
atgtctacctgtttg--cctctt--tctcttcnnnnnnnnnnngttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgcacatata |
721 |
Q |
| |
|
||||||||| ||||| ||||| |||||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53510731 |
atgtctaccagtttgtttctcttcatctctt-gatctttttttgttgctgcatatatagagaagtattgtgcataatacgccaaacttgttgcacatata |
53510633 |
T |
|
| Q |
722 |
cttaagtcttaggaccttagt |
742 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
53510632 |
cttaagtcttaagaccttagt |
53510612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 214 - 648
Target Start/End: Complemental strand, 53548837 - 53548403
Alignment:
| Q |
214 |
taaactgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaa |
313 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| || ||| | |||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53548837 |
taaactgttggaatttatattgtatta----aaatgtcaattcttcctaccattgtgaacagtccaaagaagaatgtgagcatttgatcaatctggccaa |
53548742 |
T |
|
| Q |
314 |
gcctttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgnnnnnnnngtattggttccaata |
413 |
Q |
| |
|
||||||| |||||| |||| ||| |||||| | |||||| || || ||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
53548741 |
gcctttcttggcaaaatcaagtgtcgtcgatagcaagactggaaagagtacagaaagcaggtttgcctttgcttgtgttttttt-gtatcggttccaata |
53548643 |
T |
|
| Q |
414 |
attgtagatcattttcttttt------catgtacattttcttgagaaat--gtgtccagtggtaatgcattacttttgatatatcccctgcctgtgtagc |
505 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||||||| | ||||| ||||||||||||||||| | |||||||||||| ||||| || |
|
|
| T |
53548642 |
attgtagatcatttttttttttctttccataaaccttttcttgagagactagtgtctagtggtaatgcattactctagatatatccccttcctgt--agg |
53548545 |
T |
|
| Q |
506 |
tctcgaactagttcaggaatgtttctggatagaggaaaggacaaaattgtccagaatattgaacggagaattgctgatattacctccataccaataggta |
605 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
53548544 |
gttcgaactagttcaggaatgtttctgaagagaggaaaggacaaaattatccagaatattgaaaggagaattgctgattttaccttcataccagtaggta |
53548445 |
T |
|
| Q |
606 |
tgagtatttgtgtgatatctatgtctacctgtttgcctctttc |
648 |
Q |
| |
|
||||| |||||| | || ||||||||||||| ||||||||||| |
|
|
| T |
53548444 |
tgagtttttgtgcg-taactatgtctacctgcttgcctctttc |
53548403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 457 - 653
Target Start/End: Complemental strand, 53525014 - 53524820
Alignment:
| Q |
457 |
gtgtccagtggtaatgcattacttttgatatatcccctgcctgtgtagctctcgaactagttcaggaatgtttctggatagaggaaaggacaaaattgtc |
556 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
53525014 |
gtgtcgagcggtaatgcattacttttgttatatcccatgcatgt--agcgttcgaactagttcaggaacatttctggagagaggaaaagacaaaattgtg |
53524917 |
T |
|
| Q |
557 |
cagaatattgaacggagaattgctgatattacctccataccaataggtatgagtatttgtgtgatatctatgtctacctgtttgcctctttctcttc |
653 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||| || |||||||||||||| |||| |
|
|
| T |
53524916 |
cagaatgttgaacggagaattgctgatattacctccataccaataggtatgagtttttgtgtaatacctgtgtacacatgtttgcctctttcccttc |
53524820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 53525187 - 53525047
Alignment:
| Q |
250 |
tccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcacttgttgtcgatggtgt |
349 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |
|
|
| T |
53525187 |
tccattctgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgcaaaggtcacttgttgtcgatggcgt |
53525088 |
T |
|
| Q |
350 |
aactggagaggttaaagaaagcaggtttgcctatgcttgtg |
390 |
Q |
| |
|
||| ||| ||| || | || |||||||||||||||||||| |
|
|
| T |
53525087 |
aaccggacagggtatactaaacaggtttgcctatgcttgtg |
53525047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 20197384 - 20197301
Alignment:
| Q |
250 |
tccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcac |
333 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||| |||||||| |
|
|
| T |
20197384 |
tccattatgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaaacttggcaagccttacttggaaagatcac |
20197301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 622
Target Start/End: Complemental strand, 20197167 - 20197015
Alignment:
| Q |
468 |
taatgcattacttttgatatatcccctgcctgtgtagctctcgaactagttcaggaatgtttctggatagaggaaaggacaaaattgtccagaatattga |
567 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||| |||||||||||||| || | | || ||||||||||| |||||| || |||||||||| |
|
|
| T |
20197167 |
taatgcattacttttgatatatcctctacctat--agccttcgaactagttcagaaaggactttgaggagaggaaaggataaaattatcaagaatattga |
20197070 |
T |
|
| Q |
568 |
acggagaattgctgatattacctccataccaataggtatgagtatttgtgtgata |
622 |
Q |
| |
|
| ||||||| ||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
20197069 |
gcagagaattcctgatattatctccataccagtaggtatgagattttgtgtgata |
20197015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 53525445 - 53525323
Alignment:
| Q |
18 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacg |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || || |||||||| ||||| |||||||| | |||||||||||||||| ||||||||| | |
|
|
| T |
53525445 |
aagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaaaatctag-----gtattcatacatg |
53525352 |
T |
|
| Q |
118 |
aaatattcagattgcaggaaacttaaact |
146 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
53525351 |
gaatattcagattgcagtaaacttgaact |
53525323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 665 - 720
Target Start/End: Complemental strand, 53524798 - 53524743
Alignment:
| Q |
665 |
gttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgcacatat |
720 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
53524798 |
gttgttgcacatatattgaagtattgtgcataatgcaccaaatttattgcacatat |
53524743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 53549053 - 53548992
Alignment:
| Q |
18 |
aagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggtt |
79 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
53549053 |
aagcataggctaggctcatggaaaactaaattgtatgaagatagaggttgttctgggtggtt |
53548992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 20197562 - 20197525
Alignment:
| Q |
18 |
aagcataggctaggctcatggaaaattaaattatatga |
55 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
20197562 |
aagcataggctatgctcatggaaaattaagttatatga |
20197525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 218 - 314
Target Start/End: Original strand, 16608400 - 16608492
Alignment:
| Q |
218 |
ctgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
314 |
Q |
| |
|
|||||||||| |||||||||||| ||| || ||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16608400 |
ctgttggaatttatattgtatta----aaatgtctattatgcctatcattttgtacaatcaaaataagaatgtgagcatttgatcaatcttgccaag |
16608492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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