View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14563_low_10 (Length: 313)
Name: NF14563_low_10
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 44837191 - 44836904
Alignment:
| Q |
19 |
gtggaaactaggtttagtgaggcatgtgtttaccaagctgaattggtgagtaaagagtttgatgatgggaaattttgcgatgtggaaaagaatgggaagt |
118 |
Q |
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| T |
44837191 |
gtggaaactaggtttagtgaggcatgtgtttaccaagctgaattggtgagtaaagagtttgatgatgggaaattttgcgatgtggaaaagaatgggaagt |
44837092 |
T |
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| Q |
119 |
gtttgatattgggatggaaggggactccaatgtattcaatctcagcttggaggtttctttgatggtgatcttcaattttgatttctttgtgaaatataat |
218 |
Q |
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| T |
44837091 |
gtttgatattgggatggaaggggactccaatgtattcaatctcagcttggaggtttctttgatggtgatcttcaattttgatttctttgtgaaatataat |
44836992 |
T |
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| Q |
219 |
gccaagtttaaatttcttctaattcctcatttgttggcttgtttgaatctatttttgttttgtttgaaacagtttatatttgctctgt |
306 |
Q |
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| T |
44836991 |
gccaagtttaaatttcttctaattcctcatttgttggcttgtttgaatctatttttgttttgtttgaaacagtttatatttgctctgt |
44836904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 38926580 - 38926509
Alignment:
| Q |
109 |
aatgggaagtgtttgatattgggatggaaggggactccaatgtattcaatctcagcttggaggtttctttga |
180 |
Q |
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| T |
38926580 |
aatgggaagtgtttaataattggatggaaagggactccaattcattcaatctcagcttggaagtttctttga |
38926509 |
T |
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