View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14563_low_12 (Length: 296)

Name: NF14563_low_12
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14563_low_12
NF14563_low_12
[»] scaffold0103 (2 HSPs)
scaffold0103 (208-296)||(5286-5374)
scaffold0103 (112-150)||(5432-5470)
[»] chr7 (2 HSPs)
chr7 (208-296)||(12807861-12807949)
chr7 (112-150)||(12808007-12808045)
[»] chr6 (3 HSPs)
chr6 (208-296)||(2634635-2634723)
chr6 (210-296)||(12084327-12084413)
chr6 (112-150)||(2634539-2634577)


Alignment Details
Target: scaffold0103 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 5374 - 5286
Alignment:
Q  208 ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374 ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 5286  T

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Target: scaffold0103; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 5470 - 5432
Alignment:
Q  112 ctttatgcttgatggcaaagaaacctgaagaagaagatg 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5470 ctttatgcttgatggcaaagaaacctgaagaagaagatg 5432  T

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Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 12807949 - 12807861
Alignment:
Q  208 ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12807949 ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 12807861  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 12808045 - 12808007
Alignment:
Q  112 ctttatgcttgatggcaaagaaacctgaagaagaagatg 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12808045 ctttatgcttgatggcaaagaaacctgaagaagaagatg 12808007  T

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Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 2634635 - 2634723
Alignment:
Q  208 ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2634635 ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 2634723  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 12084327 - 12084413
Alignment:
Q  210 aagaacaatgaaccggacacagaaaggtatggtgagaggaaagggaaccggactcaagtgaacaatatgaatgaagtgatgaagtag 296  Q
    |||||||||||| ||||| ||||||| || | ||||| |||| |||||||||||||||||||| |||| |||||||| |||||||||    
T  12084327 aagaacaatgaagcggacccagaaagttaggatgagatgaaacggaaccggactcaagtgaacgatatcaatgaagttatgaagtag 12084413  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 2634539 - 2634577
Alignment:
Q  112 ctttatgcttgatggcaaagaaacctgaagaagaagatg 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2634539 ctttatgcttgatggcaaagaaacctgaagaagaagatg 2634577  T

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