View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14563_low_13 (Length: 286)

Name: NF14563_low_13
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14563_low_13
NF14563_low_13
[»] chr2 (7 HSPs)
chr2 (73-267)||(32484130-32484324)
chr2 (23-84)||(32484062-32484123)
chr2 (27-78)||(11814064-11814115)
chr2 (23-75)||(1001394-1001446)
chr2 (35-75)||(14433849-14433889)
chr2 (32-75)||(8686906-8686949)
chr2 (35-75)||(16389485-16389525)
[»] chr7 (2 HSPs)
chr7 (202-267)||(47135340-47135405)
chr7 (35-74)||(31311990-31312029)
[»] chr1 (4 HSPs)
chr1 (22-75)||(23802601-23802654)
chr1 (28-78)||(4524596-4524646)
chr1 (32-75)||(5346048-5346091)
chr1 (28-75)||(6886602-6886649)
[»] chr3 (1 HSPs)
chr3 (34-78)||(47190197-47190241)
[»] chr4 (3 HSPs)
chr4 (21-74)||(45036763-45036816)
chr4 (22-75)||(12141773-12141826)
chr4 (32-78)||(789790-789836)
[»] chr5 (3 HSPs)
chr5 (32-78)||(15925892-15925938)
chr5 (32-77)||(15030481-15030526)
chr5 (39-75)||(7471473-7471509)
[»] chr8 (1 HSPs)
chr8 (35-72)||(23431738-23431775)
[»] chr6 (1 HSPs)
chr6 (25-78)||(22712206-22712259)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 32484130 - 32484324
Alignment:
Q  73 caaatgctgctctttcaacatatactagagctaataatactgaactcacaaaaatagattttctcggttctgcataagattgagatgcatgtgaatattc 172  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32484130 caaatgctgctctttcaacatgtactagagctaataatactgaactcacaaaaatagattttctcggttctgcataagattaagatgcatgtgaatattc 32484229  T
Q  173 aacaatattttaataccattaagaaggtcttaaagagtacacatgacatacctattactaaaaaatctcaatttttcaatgtccaatgcatccat 267  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32484230 aacaatattttagtaccattaagaaggtcttaaagagtacacatgacatacctattactaaaaaatctcaatttttcaatgtccaatgcatccat 32484324  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 32484062 - 32484123
Alignment:
Q  23 tgccaggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaatgctgctc 84  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32484062 tgccaggtctcaaaccgagtttctcgaggttgaagagagaaactctcaaccaaatgctgctc 32484123  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 11814064 - 11814115
Alignment:
Q  27 aggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaatg 78  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  11814064 aggtttcgaactgagtttctcgaggttgaagagagaaactctcaaccaaatg 11814115  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 1001446 - 1001394
Alignment:
Q  23 tgccaggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    |||| ||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  1001446 tgccgggtctcgaaccgagtttctcgaggttgaagagagaaattctcaaccaa 1001394  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 14433889 - 14433849
Alignment:
Q  35 aaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  14433889 aaccgagtttctcgaggttgaagagagaaactctcaaccaa 14433849  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 8686906 - 8686949
Alignment:
Q  32 tcgaaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  8686906 tcgaaccgagtttctcgaggatgaagagagaaactctcaaccaa 8686949  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 16389525 - 16389485
Alignment:
Q  35 aaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  16389525 aaccgagtttctcggggttgaagagagaaactatcaaccaa 16389485  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 47135340 - 47135405
Alignment:
Q  202 ttaaagagtacacatgacatacctattactaaaaaatctcaatttttcaatgtccaatgcatccat 267  Q
    |||||||| |||||| || ||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  47135340 ttaaagagaacacatcacgtacctatcactaacaaatctccatttttcaatgtccaatgcatccat 47135405  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 31312029 - 31311990
Alignment:
Q  35 aaccgagtttctcgaagttgaagagagaaactctcaacca 74  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  31312029 aaccgagtctctcgaggttgaagagagaaactctcaacca 31311990  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 23802601 - 23802654
Alignment:
Q  22 gtgccaggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  23802601 gtgccgggtctcgaaccgagtttctcgaggttgaagagagaaactctcaaccaa 23802654  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4524646 - 4524596
Alignment:
Q  28 ggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaatg 78  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  4524646 ggtttcgaaccgagtttcttaaggttgaagagagaaactctcaaccaaatg 4524596  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 5346048 - 5346091
Alignment:
Q  32 tcgaaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  5346048 tcgaaccgagttcctcaaagttgaagagagaaactctcaaccaa 5346091  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 6886649 - 6886602
Alignment:
Q  28 ggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  6886649 ggtttcaaaccgagtttctcgaggttgaagagagaaactttcaaccaa 6886602  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 47190241 - 47190197
Alignment:
Q  34 gaaccgagtttctcgaagttgaagagagaaactctcaaccaaatg 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  47190241 gaaccgagtttctcgaggttgaagagagaaactctcaaccaaatg 47190197  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 45036763 - 45036816
Alignment:
Q  21 agtgccaggtttcgaaccgagtttctcgaagttgaagagagaaactctcaacca 74  Q
    |||||||||| |||||||||||||| | | ||||||||||||||||||||||||    
T  45036763 agtgccaggtctcgaaccgagtttcacaaggttgaagagagaaactctcaacca 45036816  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 12141773 - 12141826
Alignment:
Q  22 gtgccaggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    ||||| ||| || ||||||||||||||| |||||||||||| ||||||||||||    
T  12141773 gtgccgggtctcaaaccgagtttctcgaggttgaagagagatactctcaaccaa 12141826  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 789790 - 789836
Alignment:
Q  32 tcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaatg 78  Q
    ||||||||||||||| ||  ||||| |||||||||||||||||||||    
T  789790 tcgaaccgagtttcttgagattgaaaagagaaactctcaaccaaatg 789836  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 15925892 - 15925938
Alignment:
Q  32 tcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaatg 78  Q
    |||||||||||||||||| |||||||||||   ||||||||||||||    
T  15925892 tcgaaccgagtttctcgaggttgaagagagtttctctcaaccaaatg 15925938  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 15030526 - 15030481
Alignment:
Q  32 tcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaat 77  Q
    ||||||||||||||| ||  ||||| ||||||||||||||||||||    
T  15030526 tcgaaccgagtttcttgagattgaaaagagaaactctcaaccaaat 15030481  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 7471509 - 7471473
Alignment:
Q  39 gagtttctcgaagttgaagagagaaactctcaaccaa 75  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  7471509 gagtttctcgaggttgaagaaagaaactctcaaccaa 7471473  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 23431775 - 23431738
Alignment:
Q  35 aaccgagtttctcgaagttgaagagagaaactctcaac 72  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  23431775 aaccgagtttctagaagttgaagagagaaactttcaac 23431738  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 22712206 - 22712259
Alignment:
Q  25 ccaggtttcgaaccgagtttctcgaagttgaagagagaaactctcaaccaaatg 78  Q
    |||||| ||||||| ||||||||||  ||||||||||| ||||| |||||||||    
T  22712206 ccaggtctcgaaccaagtttctcgagtttgaagagagatactctgaaccaaatg 22712259  T

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