View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14563_low_14 (Length: 286)
Name: NF14563_low_14
Description: NF14563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14563_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 3447699 - 3447437
Alignment:
| Q |
13 |
caaaggtgattttagaggtctctaagccacaaaacagggattatccaaaagcatcacacaatccacttcggttgaaatcaatttgaggagtctaaaatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
3447699 |
caaaggtgattttagaggtctctaagccacaaaacatggattattcaaaagcatcacacaatccacttcggttgagatcaatttgacgagtctaaaatgt |
3447600 |
T |
|
| Q |
113 |
aaaatctaatacataggctatcctcaaaattgatttcaaccg-aacaggtagcttgatgctttgatataacaactgaattttgattgttttgagtgcact |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3447599 |
aaaatctaatacttaggctatcctcaaaattgatttcaaccgaaacaggtagcttgatgctttgatataacaactgaattttgattgttttgagtgcact |
3447500 |
T |
|
| Q |
212 |
ttatgtcctaaactgttcctgcatttgaatgttttgattgttaagtcggccttttctgcatat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3447499 |
ttatgtcctaaactgttcctgcatttgaatgttttgattgttaagtcggccttttctgaatat |
3447437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University